miRNA display CGI


Results 1 - 2 of 2 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22144 5' -55.2 NC_004927.1 + 62139 0.66 0.798769
Target:  5'- uGAACGaaauccggcUACUCaGCUCGGGUUC--GGUg -3'
miRNA:   3'- -CUUGC---------AUGAGaCGAGCCCAAGgcCCG- -5'
22144 5' -55.2 NC_004927.1 + 15451 0.72 0.457984
Target:  5'- cGAUGUugUauccCUGCUCGGGgucgucguucUCCGGGUa -3'
miRNA:   3'- cUUGCAugA----GACGAGCCCa---------AGGCCCG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.