miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22150 5' -55.2 NC_004927.1 + 443 0.66 0.795439
Target:  5'- -----aCGGGGAgagacGGGGAgAGaCGGACg -3'
miRNA:   3'- auuagaGCCCCUa----CCCCU-UCaGCCUG- -5'
22150 5' -55.2 NC_004927.1 + 13036 0.66 0.785797
Target:  5'- ----gUCGGGaa-GGGGGAGUCGG-Ca -3'
miRNA:   3'- auuagAGCCCcuaCCCCUUCAGCCuG- -5'
22150 5' -55.2 NC_004927.1 + 75541 0.68 0.650292
Target:  5'- ----gUCGGGGucggAUGGGGAggGGUCGG-Cu -3'
miRNA:   3'- auuagAGCCCC----UACCCCU--UCAGCCuG- -5'
22150 5' -55.2 NC_004927.1 + 4853 0.73 0.386461
Target:  5'- -cAUCUCGGGGucguGGAAGUCGGGa -3'
miRNA:   3'- auUAGAGCCCCuaccCCUUCAGCCUg -5'
22150 5' -55.2 NC_004927.1 + 69798 0.73 0.372507
Target:  5'- gUAGagUCGGcGGGUGGGGAGGUCaagucccgagagucgGGGCg -3'
miRNA:   3'- -AUUagAGCC-CCUACCCCUUCAG---------------CCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.