Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22155 | 3' | -54.9 | NC_004927.1 | + | 890 | 0.66 | 0.862254 |
Target: 5'- aCCgGAGAgaacuaccCGGAGACGUac-UUACCCg -3' miRNA: 3'- aGGgCUCU--------GCCUUUGCGgcaAGUGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 63001 | 0.66 | 0.846047 |
Target: 5'- uUCCUGAuuGACGGAAcggauuACGUCaagcCGCCCg -3' miRNA: 3'- -AGGGCU--CUGCCUU------UGCGGcaa-GUGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 654 | 0.66 | 0.837626 |
Target: 5'- -aCCGGGGCGGGc-CGCU-UUCACCg -3' miRNA: 3'- agGGCUCUGCCUuuGCGGcAAGUGGg -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 38719 | 0.66 | 0.837626 |
Target: 5'- -aCCGAGuCGGcccGCGCCGUggggaGCCg -3' miRNA: 3'- agGGCUCuGCCuu-UGCGGCAag---UGGg -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 60134 | 0.66 | 0.829003 |
Target: 5'- cCCCGAGACGGAcucCGagaGUUCguaaACUCg -3' miRNA: 3'- aGGGCUCUGCCUuu-GCgg-CAAG----UGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 54433 | 0.67 | 0.802014 |
Target: 5'- gUCCCGAGucgcGCGGAGGCa-CGaUUACCUg -3' miRNA: 3'- -AGGGCUC----UGCCUUUGcgGCaAGUGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 33417 | 0.67 | 0.783178 |
Target: 5'- -aUCGAGuCGGAaguaAACGUCGUUgGCCg -3' miRNA: 3'- agGGCUCuGCCU----UUGCGGCAAgUGGg -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 21776 | 0.68 | 0.763758 |
Target: 5'- gCCCGAGGaaucguCGGAGucacCGUCGUcgUCGCCg -3' miRNA: 3'- aGGGCUCU------GCCUUu---GCGGCA--AGUGGg -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 38094 | 0.68 | 0.753854 |
Target: 5'- gUCCCGAGagaGCGGAuugcguaguccACGUCGaUUCcgACCCg -3' miRNA: 3'- -AGGGCUC---UGCCUu----------UGCGGC-AAG--UGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 30673 | 0.68 | 0.73371 |
Target: 5'- -aCCGAGA-GGGAACGCgGUcgggcuugaCGCCCu -3' miRNA: 3'- agGGCUCUgCCUUUGCGgCAa--------GUGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 31061 | 0.69 | 0.713186 |
Target: 5'- gUCCCGAGAgGGAGGacggGCCuucCGCUCg -3' miRNA: 3'- -AGGGCUCUgCCUUUg---CGGcaaGUGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 51782 | 0.69 | 0.66075 |
Target: 5'- cUCCCcaucuGACucgGGAAGCGCCGaUUAUCCa -3' miRNA: 3'- -AGGGcu---CUG---CCUUUGCGGCaAGUGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 42731 | 0.7 | 0.618293 |
Target: 5'- aCCCGcaGGACGGGucaauuaGCCGcUCACCa -3' miRNA: 3'- aGGGC--UCUGCCUuug----CGGCaAGUGGg -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 10391 | 0.71 | 0.565529 |
Target: 5'- cUCCCGAcgacgccccacgGugGGGcguuuCGCCGUUUACUCu -3' miRNA: 3'- -AGGGCU------------CugCCUuu---GCGGCAAGUGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 11908 | 0.71 | 0.548864 |
Target: 5'- cUCCCuccaucaucgacgggGAGAUGaGAAuguccuucuCGCUGUUCACCCa -3' miRNA: 3'- -AGGG---------------CUCUGC-CUUu--------GCGGCAAGUGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 26193 | 0.78 | 0.249042 |
Target: 5'- aCCCGAGcgaaucACGGGAACGUUcaUCACCCg -3' miRNA: 3'- aGGGCUC------UGCCUUUGCGGcaAGUGGG- -5' |
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22155 | 3' | -54.9 | NC_004927.1 | + | 70879 | 0.79 | 0.200226 |
Target: 5'- uUCCCGgcacgggaaucgagcAGACGGAGgaagauauuGCGCCGgUCGCCCu -3' miRNA: 3'- -AGGGC---------------UCUGCCUU---------UGCGGCaAGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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