miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22160 5' -50.6 NC_004927.1 + 31490 0.71 0.791628
Target:  5'- --cCGAccucGGUUGcUAUCCUCUCCGAa- -3'
miRNA:   3'- auaGCU----CCAGCaAUAGGAGAGGCUac -5'
22160 5' -50.6 NC_004927.1 + 29534 0.7 0.829731
Target:  5'- uUGUCGuAGGUCGau-UCCaUCUCgGAUGa -3'
miRNA:   3'- -AUAGC-UCCAGCaauAGG-AGAGgCUAC- -5'
22160 5' -50.6 NC_004927.1 + 3809 0.69 0.856111
Target:  5'- cAUCGA-GUCgGUUGUCCcCUCCGAg- -3'
miRNA:   3'- aUAGCUcCAG-CAAUAGGaGAGGCUac -5'
22160 5' -50.6 NC_004927.1 + 38869 0.69 0.871718
Target:  5'- aGUCGGGGUgaUGUguUCCUCgauuagcUCCGGUGg -3'
miRNA:   3'- aUAGCUCCA--GCAauAGGAG-------AGGCUAC- -5'
22160 5' -50.6 NC_004927.1 + 9708 0.67 0.943518
Target:  5'- cGUCcGGGUCGUacAUCCgccaCUCCGAUu -3'
miRNA:   3'- aUAGcUCCAGCAa-UAGGa---GAGGCUAc -5'
22160 5' -50.6 NC_004927.1 + 75384 0.66 0.948294
Target:  5'- cAUCGAGGguggUGUCCUCaUCUGAc- -3'
miRNA:   3'- aUAGCUCCagcaAUAGGAG-AGGCUac -5'
22160 5' -50.6 NC_004927.1 + 15435 0.66 0.957023
Target:  5'- -cUCGGGGUCGUcGU--UCUCCGGg- -3'
miRNA:   3'- auAGCUCCAGCAaUAggAGAGGCUac -5'
22160 5' -50.6 NC_004927.1 + 42803 0.66 0.960602
Target:  5'- aAUCGGGGUCGUcgUuguaucgcuucacGUCCUCgauguaCCGAUu -3'
miRNA:   3'- aUAGCUCCAGCA--A-------------UAGGAGa-----GGCUAc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.