miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22163 5' -53.9 NC_004927.1 + 7434 0.67 0.809562
Target:  5'- ---uGCuuGGUAgCCGCgACCGGCCAg -3'
miRNA:   3'- cauuCGcuCCAUaGGUGgUGGCUGGU- -5'
22163 5' -53.9 NC_004927.1 + 23217 0.69 0.680659
Target:  5'- -aGAGCGGGcGUcaugcgGUCUuuguaguggaacagcGCCACCGACCGg -3'
miRNA:   3'- caUUCGCUC-CA------UAGG---------------UGGUGGCUGGU- -5'
22163 5' -53.9 NC_004927.1 + 47158 0.66 0.831484
Target:  5'- -cAAGCGucguggcgcucagauGGGUAUUCuCCgcGCCGACCAc -3'
miRNA:   3'- caUUCGC---------------UCCAUAGGuGG--UGGCUGGU- -5'
22163 5' -53.9 NC_004927.1 + 47300 0.68 0.774752
Target:  5'- -aGAGCGGGGguggcGUcggguacgccuucucCCACCuCCGACCGa -3'
miRNA:   3'- caUUCGCUCCa----UA---------------GGUGGuGGCUGGU- -5'
22163 5' -53.9 NC_004927.1 + 49264 0.7 0.63282
Target:  5'- cUAAGCGAGGa---CGCUcCCGACCAc -3'
miRNA:   3'- cAUUCGCUCCauagGUGGuGGCUGGU- -5'
22163 5' -53.9 NC_004927.1 + 60969 0.66 0.862107
Target:  5'- -gAGGCG-GGUAUCCGCU-UCGGCUu -3'
miRNA:   3'- caUUCGCuCCAUAGGUGGuGGCUGGu -5'
22163 5' -53.9 NC_004927.1 + 61463 0.68 0.760681
Target:  5'- -cGGGCGAcucGGUGgacuacgCgACCGCCGACUAc -3'
miRNA:   3'- caUUCGCU---CCAUa------GgUGGUGGCUGGU- -5'
22163 5' -53.9 NC_004927.1 + 61630 0.68 0.733899
Target:  5'- gGUGAGCGAGGacgcaaacgaugugGUCUuuACCAUCGACgGg -3'
miRNA:   3'- -CAUUCGCUCCa-------------UAGG--UGGUGGCUGgU- -5'
22163 5' -53.9 NC_004927.1 + 67352 0.72 0.514758
Target:  5'- ---cGCaGAGGUuccucgaaaaGUCCACCuCCGACCAc -3'
miRNA:   3'- cauuCG-CUCCA----------UAGGUGGuGGCUGGU- -5'
22163 5' -53.9 NC_004927.1 + 71099 0.66 0.827909
Target:  5'- -cGAGCGGauGGacUUCGCCGCCGACa- -3'
miRNA:   3'- caUUCGCU--CCauAGGUGGUGGCUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.