Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22163 | 5' | -53.9 | NC_004927.1 | + | 7434 | 0.67 | 0.809562 |
Target: 5'- ---uGCuuGGUAgCCGCgACCGGCCAg -3' miRNA: 3'- cauuCGcuCCAUaGGUGgUGGCUGGU- -5' |
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22163 | 5' | -53.9 | NC_004927.1 | + | 23217 | 0.69 | 0.680659 |
Target: 5'- -aGAGCGGGcGUcaugcgGUCUuuguaguggaacagcGCCACCGACCGg -3' miRNA: 3'- caUUCGCUC-CA------UAGG---------------UGGUGGCUGGU- -5' |
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22163 | 5' | -53.9 | NC_004927.1 | + | 47158 | 0.66 | 0.831484 |
Target: 5'- -cAAGCGucguggcgcucagauGGGUAUUCuCCgcGCCGACCAc -3' miRNA: 3'- caUUCGC---------------UCCAUAGGuGG--UGGCUGGU- -5' |
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22163 | 5' | -53.9 | NC_004927.1 | + | 47300 | 0.68 | 0.774752 |
Target: 5'- -aGAGCGGGGguggcGUcggguacgccuucucCCACCuCCGACCGa -3' miRNA: 3'- caUUCGCUCCa----UA---------------GGUGGuGGCUGGU- -5' |
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22163 | 5' | -53.9 | NC_004927.1 | + | 49264 | 0.7 | 0.63282 |
Target: 5'- cUAAGCGAGGa---CGCUcCCGACCAc -3' miRNA: 3'- cAUUCGCUCCauagGUGGuGGCUGGU- -5' |
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22163 | 5' | -53.9 | NC_004927.1 | + | 60969 | 0.66 | 0.862107 |
Target: 5'- -gAGGCG-GGUAUCCGCU-UCGGCUu -3' miRNA: 3'- caUUCGCuCCAUAGGUGGuGGCUGGu -5' |
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22163 | 5' | -53.9 | NC_004927.1 | + | 61463 | 0.68 | 0.760681 |
Target: 5'- -cGGGCGAcucGGUGgacuacgCgACCGCCGACUAc -3' miRNA: 3'- caUUCGCU---CCAUa------GgUGGUGGCUGGU- -5' |
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22163 | 5' | -53.9 | NC_004927.1 | + | 61630 | 0.68 | 0.733899 |
Target: 5'- gGUGAGCGAGGacgcaaacgaugugGUCUuuACCAUCGACgGg -3' miRNA: 3'- -CAUUCGCUCCa-------------UAGG--UGGUGGCUGgU- -5' |
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22163 | 5' | -53.9 | NC_004927.1 | + | 67352 | 0.72 | 0.514758 |
Target: 5'- ---cGCaGAGGUuccucgaaaaGUCCACCuCCGACCAc -3' miRNA: 3'- cauuCG-CUCCA----------UAGGUGGuGGCUGGU- -5' |
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22163 | 5' | -53.9 | NC_004927.1 | + | 71099 | 0.66 | 0.827909 |
Target: 5'- -cGAGCGGauGGacUUCGCCGCCGACa- -3' miRNA: 3'- caUUCGCU--CCauAGGUGGUGGCUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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