miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22164 5' -50.8 NC_004927.1 + 36454 0.66 0.964865
Target:  5'- --gUCACGGuUCGaCCAcGGC-CCGAgCg -3'
miRNA:   3'- gaaAGUGCC-AGC-GGUaUCGuGGUUgG- -5'
22164 5' -50.8 NC_004927.1 + 7753 0.66 0.961195
Target:  5'- ---aCAcCGGaCGCCGUAGCuccguucuUCGACCg -3'
miRNA:   3'- gaaaGU-GCCaGCGGUAUCGu-------GGUUGG- -5'
22164 5' -50.8 NC_004927.1 + 2129 0.66 0.952642
Target:  5'- --gUCGuagaGGUCGCUAacgugguUAGCGCCGAUg -3'
miRNA:   3'- gaaAGUg---CCAGCGGU-------AUCGUGGUUGg -5'
22164 5' -50.8 NC_004927.1 + 19932 0.67 0.943885
Target:  5'- --gUCGCGGUCGUCGUcGUuacuGCCGAa- -3'
miRNA:   3'- gaaAGUGCCAGCGGUAuCG----UGGUUgg -5'
22164 5' -50.8 NC_004927.1 + 52956 0.67 0.928028
Target:  5'- -----uUGGUCGCCA-AGCGuuGACCu -3'
miRNA:   3'- gaaaguGCCAGCGGUaUCGUggUUGG- -5'
22164 5' -50.8 NC_004927.1 + 4883 0.68 0.909653
Target:  5'- --gUCuCGGUCGUCGUAGCuCgAugCg -3'
miRNA:   3'- gaaAGuGCCAGCGGUAUCGuGgUugG- -5'
22164 5' -50.8 NC_004927.1 + 12571 0.69 0.847956
Target:  5'- -cUUCGuagaGGUCGCCGUcccaaAGCGCCGagaagaagugaccGCCg -3'
miRNA:   3'- gaAAGUg---CCAGCGGUA-----UCGUGGU-------------UGG- -5'
22164 5' -50.8 NC_004927.1 + 11929 0.7 0.80311
Target:  5'- ----aACGGUCGCCGUAGaggUCAACUc -3'
miRNA:   3'- gaaagUGCCAGCGGUAUCgu-GGUUGG- -5'
22164 5' -50.8 NC_004927.1 + 30910 0.71 0.783484
Target:  5'- ----uGCGGUCGUaGUAGUugUAGCCg -3'
miRNA:   3'- gaaagUGCCAGCGgUAUCGugGUUGG- -5'
22164 5' -50.8 NC_004927.1 + 14580 0.72 0.721154
Target:  5'- ---cCACGG-CGCuCGUGGguCGCCAGCCg -3'
miRNA:   3'- gaaaGUGCCaGCG-GUAUC--GUGGUUGG- -5'
22164 5' -50.8 NC_004927.1 + 14409 0.74 0.632338
Target:  5'- --gUCugcCGGUCGCCAUcgagguaguggucAGCguACCAGCCa -3'
miRNA:   3'- gaaAGu--GCCAGCGGUA-------------UCG--UGGUUGG- -5'
22164 5' -50.8 NC_004927.1 + 63786 0.78 0.385574
Target:  5'- gCUUcUACGGUCGCCGUGaCACCcACCu -3'
miRNA:   3'- -GAAaGUGCCAGCGGUAUcGUGGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.