Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22166 | 3' | -53.3 | NC_004927.1 | + | 75651 | 0.66 | 0.871585 |
Target: 5'- -gGGACAGgGGACG-----GGGGCCGg -3' miRNA: 3'- gaCUUGUCgCUUGCguuagUCCCGGC- -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 134 | 0.66 | 0.871585 |
Target: 5'- -gGGACAGgGGACG-----GGGGCCGg -3' miRNA: 3'- gaCUUGUCgCUUGCguuagUCCCGGC- -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 34845 | 0.66 | 0.855419 |
Target: 5'- -cGAGCGGCcaucacggGAACGUcGUCGGGGUUc -3' miRNA: 3'- gaCUUGUCG--------CUUGCGuUAGUCCCGGc -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 26703 | 0.66 | 0.855419 |
Target: 5'- -cGAGCGGCuacuuCGCAGUCcGGGCa- -3' miRNA: 3'- gaCUUGUCGcuu--GCGUUAGuCCCGgc -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 20370 | 0.67 | 0.846985 |
Target: 5'- uUGG--AGCGAGCGguAcuUCcGGGCCGg -3' miRNA: 3'- gACUugUCGCUUGCguU--AGuCCCGGC- -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 30676 | 0.67 | 0.838329 |
Target: 5'- -gGAACcgagAGgGAACGCGGUC-GGGCUu -3' miRNA: 3'- gaCUUG----UCgCUUGCGUUAGuCCCGGc -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 17498 | 0.69 | 0.70995 |
Target: 5'- -cGAACAGCccGAACacgGCAGUCugAGGGUCGc -3' miRNA: 3'- gaCUUGUCG--CUUG---CGUUAG--UCCCGGC- -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 59583 | 0.7 | 0.688452 |
Target: 5'- -gGGGCcGCGAGCGUAAUCuucGGCCu -3' miRNA: 3'- gaCUUGuCGCUUGCGUUAGuc-CCGGc -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 14224 | 0.71 | 0.601156 |
Target: 5'- aUGAACGuCGuguCGCAAUCGGGGCa- -3' miRNA: 3'- gACUUGUcGCuu-GCGUUAGUCCCGgc -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 42876 | 0.73 | 0.474392 |
Target: 5'- -aGGACAGCGAACGgGugaauGUCGaGGCCGa -3' miRNA: 3'- gaCUUGUCGCUUGCgU-----UAGUcCCGGC- -5' |
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22166 | 3' | -53.3 | NC_004927.1 | + | 53850 | 0.79 | 0.231606 |
Target: 5'- -cGAACccggAGCGAGCGCAaacGUCGGGGCUa -3' miRNA: 3'- gaCUUG----UCGCUUGCGU---UAGUCCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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