miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22169 3' -49.3 NC_004927.1 + 21621 0.76 0.620814
Target:  5'- aGGAGAGGaugacacggcggccuUCGAGGUCGUCacggaguUCGAGAGc -3'
miRNA:   3'- -CCUCUUC---------------AGCUUCAGCAGg------AGUUCUC- -5'
22169 3' -49.3 NC_004927.1 + 33257 0.67 0.97952
Target:  5'- aGGGAAG-CGAGGUCGauuccgaccacguucUCCUUGAGGc -3'
miRNA:   3'- cCUCUUCaGCUUCAGC---------------AGGAGUUCUc -5'
22169 3' -49.3 NC_004927.1 + 8524 0.67 0.973125
Target:  5'- cGAGGuGGUgcuUGAGGUCGUCCaccaCGAGAGc -3'
miRNA:   3'- cCUCU-UCA---GCUUCAGCAGGa---GUUCUC- -5'
22169 3' -49.3 NC_004927.1 + 20584 0.67 0.973125
Target:  5'- aGAGAGGccauccgcUCGAAcGUCGUCagCGAGAGa -3'
miRNA:   3'- cCUCUUC--------AGCUU-CAGCAGgaGUUCUC- -5'
22169 3' -49.3 NC_004927.1 + 27132 0.68 0.963242
Target:  5'- cGAGAAGuUCGAGGUCGccgcgcugaagUCUCAGGuAGa -3'
miRNA:   3'- cCUCUUC-AGCUUCAGCa----------GGAGUUC-UC- -5'
22169 3' -49.3 NC_004927.1 + 42952 0.68 0.963242
Target:  5'- aGuGAAGUCGcGGUUGUCCUCu---- -3'
miRNA:   3'- cCuCUUCAGCuUCAGCAGGAGuucuc -5'
22169 3' -49.3 NC_004927.1 + 26128 0.68 0.959448
Target:  5'- aGGcaauGUCGAAGUCGUgCUgGAGAa -3'
miRNA:   3'- -CCucuuCAGCUUCAGCAgGAgUUCUc -5'
22169 3' -49.3 NC_004927.1 + 31101 0.7 0.913065
Target:  5'- cGGGGAAcggauguucgucGUCGggGuggagacacauuUCGUCC-CGAGAGg -3'
miRNA:   3'- -CCUCUU------------CAGCuuC------------AGCAGGaGUUCUC- -5'
22169 3' -49.3 NC_004927.1 + 41191 0.7 0.913065
Target:  5'- ----cGGUCGAGGUCGUCCUUGAu-- -3'
miRNA:   3'- ccucuUCAGCUUCAGCAGGAGUUcuc -5'
22169 3' -49.3 NC_004927.1 + 19531 0.72 0.826639
Target:  5'- cGAGc-GUCGGAGuuUCGUCaCUCGGGAGg -3'
miRNA:   3'- cCUCuuCAGCUUC--AGCAG-GAGUUCUC- -5'
22169 3' -49.3 NC_004927.1 + 60252 0.66 0.986895
Target:  5'- cGGGGAAGaccgagacguUCGAGGaCGUUCUCGugacGAGc -3'
miRNA:   3'- -CCUCUUC----------AGCUUCaGCAGGAGUu---CUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.