miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22169 5' -53.1 NC_004927.1 + 15239 0.81 0.184696
Target:  5'- cGACCCUUGACuUUCGCUCGGCggCGUa -3'
miRNA:   3'- -CUGGGAACUG-AAGCGGGUUGaaGCGg -5'
22169 5' -53.1 NC_004927.1 + 24445 0.67 0.832412
Target:  5'- cGCCUgcGAUUUCGUCCAguugaGCUaucaucuggUCGCCg -3'
miRNA:   3'- cUGGGaaCUGAAGCGGGU-----UGA---------AGCGG- -5'
22169 5' -53.1 NC_004927.1 + 16063 0.67 0.858118
Target:  5'- uGCuCCUUGGg-UUGCCUAACUcUGCCg -3'
miRNA:   3'- cUG-GGAACUgaAGCGGGUUGAaGCGG- -5'
22169 5' -53.1 NC_004927.1 + 42485 0.67 0.858118
Target:  5'- uGAUuuUugUGACcUCGCCCGucccCUUCGCUa -3'
miRNA:   3'- -CUGggA--ACUGaAGCGGGUu---GAAGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.