miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22171 3' -58 NC_004927.1 + 68322 0.66 0.61358
Target:  5'- gAG-GCCGAguucucUGAcaugGGCCAGCGUggGGa -3'
miRNA:   3'- -UCgCGGCU------GCUa---UCGGUCGCGuuCCa -5'
22171 3' -58 NC_004927.1 + 69245 0.66 0.645616
Target:  5'- cGCGCCGAgGAUGGUgAGCu---GGUu -3'
miRNA:   3'- uCGCGGCUgCUAUCGgUCGcguuCCA- -5'
22171 3' -58 NC_004927.1 + 32800 0.67 0.581678
Target:  5'- cGgGCCGcCG-UAGCCGGUGU-AGGUg -3'
miRNA:   3'- uCgCGGCuGCuAUCGGUCGCGuUCCA- -5'
22171 3' -58 NC_004927.1 + 14577 0.68 0.478927
Target:  5'- cGGCGCuCGugGGUcGCCAGCcgacguucccGguGGGUa -3'
miRNA:   3'- -UCGCG-GCugCUAuCGGUCG----------CguUCCA- -5'
22171 3' -58 NC_004927.1 + 59377 0.7 0.38589
Target:  5'- gAGCGUCGGCGGcgguaaUGGUCGGCGCucucGGa -3'
miRNA:   3'- -UCGCGGCUGCU------AUCGGUCGCGuu--CCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.