Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22172 | 3' | -61.4 | NC_004927.1 | + | 10999 | 0.71 | 0.230393 |
Target: 5'- -aGCCGcuauGUCGGCguucaUCGCUCGGGUCu -3' miRNA: 3'- cgCGGCccu-CAGUCG-----AGCGAGCCCAG- -5' |
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22172 | 3' | -61.4 | NC_004927.1 | + | 4036 | 0.71 | 0.236104 |
Target: 5'- uGCGUCGGucGgcucucUCGGCUCGUUCGaGGUCa -3' miRNA: 3'- -CGCGGCCcuC------AGUCGAGCGAGC-CCAG- -5' |
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22172 | 3' | -61.4 | NC_004927.1 | + | 7363 | 0.68 | 0.368019 |
Target: 5'- uCGCuCGuucGGAa-CGGCUUGCUCGGGUCu -3' miRNA: 3'- cGCG-GC---CCUcaGUCGAGCGAGCCCAG- -5' |
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22172 | 3' | -61.4 | NC_004927.1 | + | 75257 | 0.67 | 0.418997 |
Target: 5'- uCGCCGuGGAGggAGuCUCGgUCGGGg- -3' miRNA: 3'- cGCGGC-CCUCagUC-GAGCgAGCCCag -5' |
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22172 | 3' | -61.4 | NC_004927.1 | + | 52570 | 0.67 | 0.446042 |
Target: 5'- cUGCCGGGAcuacgguaaaGUCucaguauaacGGCUCGCUCcGGUa -3' miRNA: 3'- cGCGGCCCU----------CAG----------UCGAGCGAGcCCAg -5' |
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22172 | 3' | -61.4 | NC_004927.1 | + | 50395 | 0.66 | 0.464603 |
Target: 5'- cUGCCGGGAG-CGGUggugguggUGCUgGcGGUCa -3' miRNA: 3'- cGCGGCCCUCaGUCGa-------GCGAgC-CCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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