miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22172 3' -61.4 NC_004927.1 + 10999 0.71 0.230393
Target:  5'- -aGCCGcuauGUCGGCguucaUCGCUCGGGUCu -3'
miRNA:   3'- cgCGGCccu-CAGUCG-----AGCGAGCCCAG- -5'
22172 3' -61.4 NC_004927.1 + 4036 0.71 0.236104
Target:  5'- uGCGUCGGucGgcucucUCGGCUCGUUCGaGGUCa -3'
miRNA:   3'- -CGCGGCCcuC------AGUCGAGCGAGC-CCAG- -5'
22172 3' -61.4 NC_004927.1 + 7363 0.68 0.368019
Target:  5'- uCGCuCGuucGGAa-CGGCUUGCUCGGGUCu -3'
miRNA:   3'- cGCG-GC---CCUcaGUCGAGCGAGCCCAG- -5'
22172 3' -61.4 NC_004927.1 + 75257 0.67 0.418997
Target:  5'- uCGCCGuGGAGggAGuCUCGgUCGGGg- -3'
miRNA:   3'- cGCGGC-CCUCagUC-GAGCgAGCCCag -5'
22172 3' -61.4 NC_004927.1 + 52570 0.67 0.446042
Target:  5'- cUGCCGGGAcuacgguaaaGUCucaguauaacGGCUCGCUCcGGUa -3'
miRNA:   3'- cGCGGCCCU----------CAG----------UCGAGCGAGcCCAg -5'
22172 3' -61.4 NC_004927.1 + 50395 0.66 0.464603
Target:  5'- cUGCCGGGAG-CGGUggugguggUGCUgGcGGUCa -3'
miRNA:   3'- cGCGGCCCUCaGUCGa-------GCGAgC-CCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.