miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22174 5' -53.5 NC_004927.1 + 31731 0.87 0.071664
Target:  5'- -cCUCCCCCUCGAUGAUgguguUCGCUUCa- -3'
miRNA:   3'- uaGAGGGGGAGCUACUA-----AGCGAAGcg -5'
22174 5' -53.5 NC_004927.1 + 43921 0.77 0.301683
Target:  5'- cUCgaaCCCCCUCGAUGAUUU-CUUCGUc -3'
miRNA:   3'- uAGa--GGGGGAGCUACUAAGcGAAGCG- -5'
22174 5' -53.5 NC_004927.1 + 5327 0.71 0.612743
Target:  5'- -gCUCaUCCCUUGAUGAUuuggaguccacgguUCGCUUCGa -3'
miRNA:   3'- uaGAG-GGGGAGCUACUA--------------AGCGAAGCg -5'
22174 5' -53.5 NC_004927.1 + 25321 0.69 0.702983
Target:  5'- uUCgaccuugCCCCCgUCGAUGcgUCuuUUCGCa -3'
miRNA:   3'- uAGa------GGGGG-AGCUACuaAGcgAAGCG- -5'
22174 5' -53.5 NC_004927.1 + 15211 0.69 0.717908
Target:  5'- cUCaUCCCCCUCGAUucuuucgaccgccgcGAgccaCGCUUgGCg -3'
miRNA:   3'- uAG-AGGGGGAGCUA---------------CUaa--GCGAAgCG- -5'
22174 5' -53.5 NC_004927.1 + 27639 0.69 0.724256
Target:  5'- aGUUUCagaacgCCCCUCGAUGAUUuccugCGCUUCu- -3'
miRNA:   3'- -UAGAG------GGGGAGCUACUAA-----GCGAAGcg -5'
22174 5' -53.5 NC_004927.1 + 68443 0.68 0.785548
Target:  5'- aGUCUCgCCUCUCGGUGAggacgaGCUg-GCa -3'
miRNA:   3'- -UAGAG-GGGGAGCUACUaag---CGAagCG- -5'
22174 5' -53.5 NC_004927.1 + 34114 0.68 0.795277
Target:  5'- -gCUCCCUCUCGgAUGAUgcggCGaaugucgUCGCu -3'
miRNA:   3'- uaGAGGGGGAGC-UACUAa---GCga-----AGCG- -5'
22174 5' -53.5 NC_004927.1 + 30437 0.67 0.804839
Target:  5'- --aUCUCCCUCGGUGGUcggGCUuUCGUa -3'
miRNA:   3'- uagAGGGGGAGCUACUAag-CGA-AGCG- -5'
22174 5' -53.5 NC_004927.1 + 5058 0.67 0.808614
Target:  5'- -cCUCCguCCCUCGGUcgaucuccagaacagGAUUCGCgUUGCu -3'
miRNA:   3'- uaGAGG--GGGAGCUA---------------CUAAGCGaAGCG- -5'
22174 5' -53.5 NC_004927.1 + 42439 0.67 0.820678
Target:  5'- -gCUUgCCCUCGAUGcgugggaacgggucAUUUGCUcCGCg -3'
miRNA:   3'- uaGAGgGGGAGCUAC--------------UAAGCGAaGCG- -5'
22174 5' -53.5 NC_004927.1 + 73171 0.67 0.8412
Target:  5'- cUCUCCCCCUCGAUGcggUGaaUCu- -3'
miRNA:   3'- uAGAGGGGGAGCUACuaaGCgaAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.