miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22178 5' -54.9 NC_004927.1 + 28082 0.66 0.83563
Target:  5'- gUCCGgucuugugacGCCGCUCGcuggaGAAUGUCCAucagaacauccuuCGUCu -3'
miRNA:   3'- aGGGU----------UGGCGAGC-----CUUACAGGU-------------GCAG- -5'
22178 5' -54.9 NC_004927.1 + 1127 0.66 0.818767
Target:  5'- gUUCgGGCCGCUUucaGGuuAUGUCCcCGUCu -3'
miRNA:   3'- -AGGgUUGGCGAG---CCu-UACAGGuGCAG- -5'
22178 5' -54.9 NC_004927.1 + 38107 0.66 0.816041
Target:  5'- aCCCgAGCCGagcgucccgagagagCGGAuugcguaGUCCACGUCg -3'
miRNA:   3'- aGGG-UUGGCga-------------GCCUua-----CAGGUGCAG- -5'
22178 5' -54.9 NC_004927.1 + 49251 0.67 0.781133
Target:  5'- cUCCCGACCacguuGCUCcgGGGAUGcaacUUCACGUa -3'
miRNA:   3'- -AGGGUUGG-----CGAG--CCUUAC----AGGUGCAg -5'
22178 5' -54.9 NC_004927.1 + 26049 0.67 0.77133
Target:  5'- gUUCUGACCGUgcCGGAugugggccuuGUGUCCACGa- -3'
miRNA:   3'- -AGGGUUGGCGa-GCCU----------UACAGGUGCag -5'
22178 5' -54.9 NC_004927.1 + 30858 0.67 0.760387
Target:  5'- aUCCCcgaauugAGCCGCUUucaGGGgugaggcgGUGUCCACGg- -3'
miRNA:   3'- -AGGG-------UUGGCGAG---CCU--------UACAGGUGCag -5'
22178 5' -54.9 NC_004927.1 + 23073 0.68 0.730848
Target:  5'- gUCCC-ACCGUUCGGGccGUCguCGg- -3'
miRNA:   3'- -AGGGuUGGCGAGCCUuaCAGguGCag -5'
22178 5' -54.9 NC_004927.1 + 37770 0.69 0.678197
Target:  5'- cCCCGACCGUcuUCGGAAUca-CGCGgUCa -3'
miRNA:   3'- aGGGUUGGCG--AGCCUUAcagGUGC-AG- -5'
22178 5' -54.9 NC_004927.1 + 31109 0.69 0.678197
Target:  5'- cUCCCGACCGgggaaCGGA-UGUUCGuCGUCg -3'
miRNA:   3'- -AGGGUUGGCga---GCCUuACAGGU-GCAG- -5'
22178 5' -54.9 NC_004927.1 + 37865 0.69 0.656771
Target:  5'- cUCCUuguucACCGCaCGGAAgucGUCUAUGUCg -3'
miRNA:   3'- -AGGGu----UGGCGaGCCUUa--CAGGUGCAG- -5'
22178 5' -54.9 NC_004927.1 + 6110 0.69 0.656771
Target:  5'- uUCCCAuCCagucCUCGGggUagucucUCCACGUCa -3'
miRNA:   3'- -AGGGUuGGc---GAGCCuuAc-----AGGUGCAG- -5'
22178 5' -54.9 NC_004927.1 + 8352 0.71 0.518554
Target:  5'- cUCCCAauACUGCUCGauGUGUCCGaacucCGUCu -3'
miRNA:   3'- -AGGGU--UGGCGAGCcuUACAGGU-----GCAG- -5'
22178 5' -54.9 NC_004927.1 + 11501 0.78 0.218709
Target:  5'- uUCCCAcggcuccagaugaACCGUUCGaGGAacuUGUCCACGUCc -3'
miRNA:   3'- -AGGGU-------------UGGCGAGC-CUU---ACAGGUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.