miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2218 3' -64.1 NC_001405.1 + 9780 0.66 0.221219
Target:  5'- cCGCUGCCGcCCGCCacgGuGCUcagCCUaCCUu -3'
miRNA:   3'- -GCGGCGGC-GGCGGa--C-CGAa--GGA-GGAc -5'
2218 3' -64.1 NC_001405.1 + 17514 0.66 0.217823
Target:  5'- cCGCCGCCGUCGCCgucgccagcccgugcUGGCc-CCgauuUCCg- -3'
miRNA:   3'- -GCGGCGGCGGCGG---------------ACCGaaGG----AGGac -5'
2218 3' -64.1 NC_001405.1 + 10132 0.66 0.215585
Target:  5'- gCGuuGUCGCCGaCCUGGC--CCUgCUu -3'
miRNA:   3'- -GCggCGGCGGC-GGACCGaaGGAgGAc -5'
2218 3' -64.1 NC_001405.1 + 18795 0.66 0.204685
Target:  5'- aGCCGCCGUgCGCCcgcuuuccaagaUGGCUaCC-CCUu -3'
miRNA:   3'- gCGGCGGCG-GCGG------------ACCGAaGGaGGAc -5'
2218 3' -64.1 NC_001405.1 + 10381 0.66 0.194267
Target:  5'- aGCCGCCGCCGCacuuuuUGGUgggauaUCaguaCCUGg -3'
miRNA:   3'- gCGGCGGCGGCGg-----ACCGa-----AGga--GGAC- -5'
2218 3' -64.1 NC_001405.1 + 16386 0.67 0.184315
Target:  5'- gGCCGCgGCUGCUgcGGCggCCgcucgucgCCUGg -3'
miRNA:   3'- gCGGCGgCGGCGGa-CCGaaGGa-------GGAC- -5'
2218 3' -64.1 NC_001405.1 + 23635 0.67 0.17951
Target:  5'- aGCCGCCGCa-CCgUGcGCUUaCCUCCc- -3'
miRNA:   3'- gCGGCGGCGgcGG-AC-CGAA-GGAGGac -5'
2218 3' -64.1 NC_001405.1 + 26878 0.67 0.164874
Target:  5'- uGCUGCCGCCGCUguggauuucuugGGCUUUgUCa-- -3'
miRNA:   3'- gCGGCGGCGGCGGa-----------CCGAAGgAGgac -5'
2218 3' -64.1 NC_001405.1 + 11198 0.68 0.161386
Target:  5'- uGCCGCCGCgucaGCCgcggauGUUgccCCUCCUGa -3'
miRNA:   3'- gCGGCGGCGg---CGGac----CGAa--GGAGGAC- -5'
2218 3' -64.1 NC_001405.1 + 16260 0.68 0.161386
Target:  5'- gGCCGCCGCCGCgCguugGGCggCagugCCg- -3'
miRNA:   3'- gCGGCGGCGGCG-Ga---CCGaaGga--GGac -5'
2218 3' -64.1 NC_001405.1 + 15247 0.68 0.144928
Target:  5'- uGCCGCUGCCucgGCCUcagcGcGCUucUCCUCCg- -3'
miRNA:   3'- gCGGCGGCGG---CGGA----C-CGA--AGGAGGac -5'
2218 3' -64.1 NC_001405.1 + 23994 0.69 0.130015
Target:  5'- uCGCCGUCGCCGCCg-----CCUCCc- -3'
miRNA:   3'- -GCGGCGGCGGCGGaccgaaGGAGGac -5'
2218 3' -64.1 NC_001405.1 + 15104 0.72 0.076783
Target:  5'- uGuuGCCGCCGCCUGcGCcaUCCccgcCCUGu -3'
miRNA:   3'- gCggCGGCGGCGGAC-CGa-AGGa---GGAC- -5'
2218 3' -64.1 NC_001405.1 + 33230 0.72 0.068602
Target:  5'- uGCUGCCGCCGCC--GCU-CCgUCCUGc -3'
miRNA:   3'- gCGGCGGCGGCGGacCGAaGG-AGGAC- -5'
2218 3' -64.1 NC_001405.1 + 2220 1.07 0.000114
Target:  5'- cCGCCGCCGCCGCCUGGCUUCCUCCUGc -3'
miRNA:   3'- -GCGGCGGCGGCGGACCGAAGGAGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.