miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22180 5' -57.9 NC_004927.1 + 12904 0.66 0.672586
Target:  5'- uGGUCGauagaauCACGUCCgUUCAggaaCAGGACg -3'
miRNA:   3'- gCCAGCgc-----GUGCAGG-AGGUa---GUCCUG- -5'
22180 5' -57.9 NC_004927.1 + 46224 0.66 0.693439
Target:  5'- aGGUCGCGCgguGCGUCaugcgauaCAUCgaccggaggGGGACg -3'
miRNA:   3'- gCCAGCGCG---UGCAGgag-----GUAG---------UCCUG- -5'
22180 5' -57.9 NC_004927.1 + 8306 0.67 0.630536
Target:  5'- gGGUCGUcuucGUugGaagCCUCgaaGUCGGGACg -3'
miRNA:   3'- gCCAGCG----CGugCa--GGAGg--UAGUCCUG- -5'
22180 5' -57.9 NC_004927.1 + 40909 0.69 0.48668
Target:  5'- uCGGUaaaGCGCGUCCUUgGUaAGGACg -3'
miRNA:   3'- -GCCAgcgCGUGCAGGAGgUAgUCCUG- -5'
22180 5' -57.9 NC_004927.1 + 29349 0.7 0.448266
Target:  5'- -cGUCGCcCACGUCuCUCCGucgugguggUCGGGGCu -3'
miRNA:   3'- gcCAGCGcGUGCAG-GAGGU---------AGUCCUG- -5'
22180 5' -57.9 NC_004927.1 + 37877 0.71 0.368458
Target:  5'- cCGGUCGCGCACcUCCUUguUCAccgcacGGAa -3'
miRNA:   3'- -GCCAGCGCGUGcAGGAGguAGU------CCUg -5'
22180 5' -57.9 NC_004927.1 + 12521 0.71 0.376833
Target:  5'- uGGUCgaagucuuugGCGU-UGUCCUCCGUCAGcGACu -3'
miRNA:   3'- gCCAG----------CGCGuGCAGGAGGUAGUC-CUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.