miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22185 3' -53.5 NC_004927.1 + 24581 0.73 0.472481
Target:  5'- aGCUCCUCGAugCuCACCg---GGACa -3'
miRNA:   3'- cUGAGGAGCUugGuGUGGaagaCCUG- -5'
22185 3' -53.5 NC_004927.1 + 26226 0.66 0.878075
Target:  5'- aGACUCCUCGAagucACCcgGCGgCUUgaUGGAa -3'
miRNA:   3'- -CUGAGGAGCU----UGG--UGUgGAAg-ACCUg -5'
22185 3' -53.5 NC_004927.1 + 33941 0.66 0.870311
Target:  5'- ---cCCUCGucCCACACCUUCguauaGGCg -3'
miRNA:   3'- cugaGGAGCuuGGUGUGGAAGac---CUG- -5'
22185 3' -53.5 NC_004927.1 + 44501 0.72 0.555847
Target:  5'- cGGCUUCUCGAACCGCuccauACUUUUcGGAUa -3'
miRNA:   3'- -CUGAGGAGCUUGGUG-----UGGAAGaCCUG- -5'
22185 3' -53.5 NC_004927.1 + 45480 0.7 0.642944
Target:  5'- cGAcCUUCUCGAACUAUACCUcaaGGGCg -3'
miRNA:   3'- -CU-GAGGAGCUUGGUGUGGAagaCCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.