miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22187 3' -56 NC_004927.1 + 75794 0.66 0.818663
Target:  5'- cCGACCGGcCCGAGAga--CGGgcaGGGGa -3'
miRNA:   3'- -GCUGGCU-GGCUUUagcaGCCa--CCCCa -5'
22187 3' -56 NC_004927.1 + 277 0.66 0.818663
Target:  5'- cCGACCGGcCCGAGAga--CGGgcaGGGGa -3'
miRNA:   3'- -GCUGGCU-GGCUUUagcaGCCa--CCCCa -5'
22187 3' -56 NC_004927.1 + 35786 0.66 0.781835
Target:  5'- cCGcCCGACCGAGcuaCGUCcGUGGaGGa -3'
miRNA:   3'- -GCuGGCUGGCUUua-GCAGcCACC-CCa -5'
22187 3' -56 NC_004927.1 + 69819 0.66 0.772248
Target:  5'- cCGACUGAcaCCGGgacugguguagAGUCGgcgGGUGGGGa -3'
miRNA:   3'- -GCUGGCU--GGCU-----------UUAGCag-CCACCCCa -5'
22187 3' -56 NC_004927.1 + 50053 0.67 0.762528
Target:  5'- aGACUGuccCUGAAAUcaaCGUggaCGGUGGGGUu -3'
miRNA:   3'- gCUGGCu--GGCUUUA---GCA---GCCACCCCA- -5'
22187 3' -56 NC_004927.1 + 31107 0.67 0.74273
Target:  5'- --cCCGACCGggGaacggauguUCGUCGucGGGGUg -3'
miRNA:   3'- gcuGGCUGGCuuU---------AGCAGCcaCCCCA- -5'
22187 3' -56 NC_004927.1 + 21331 0.68 0.71229
Target:  5'- gGAgCG-CCGuuGUCGUCGGUGGcGa -3'
miRNA:   3'- gCUgGCuGGCuuUAGCAGCCACCcCa -5'
22187 3' -56 NC_004927.1 + 6896 0.71 0.514603
Target:  5'- uCGACCGGaaGggGUUGUCGucagaagcGUGGGGc -3'
miRNA:   3'- -GCUGGCUggCuuUAGCAGC--------CACCCCa -5'
22187 3' -56 NC_004927.1 + 46332 0.71 0.494663
Target:  5'- aGAUU-ACCGAGcgCGUCGGUGGGa- -3'
miRNA:   3'- gCUGGcUGGCUUuaGCAGCCACCCca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.