Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22187 | 3' | -56 | NC_004927.1 | + | 75794 | 0.66 | 0.818663 |
Target: 5'- cCGACCGGcCCGAGAga--CGGgcaGGGGa -3' miRNA: 3'- -GCUGGCU-GGCUUUagcaGCCa--CCCCa -5' |
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22187 | 3' | -56 | NC_004927.1 | + | 277 | 0.66 | 0.818663 |
Target: 5'- cCGACCGGcCCGAGAga--CGGgcaGGGGa -3' miRNA: 3'- -GCUGGCU-GGCUUUagcaGCCa--CCCCa -5' |
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22187 | 3' | -56 | NC_004927.1 | + | 35786 | 0.66 | 0.781835 |
Target: 5'- cCGcCCGACCGAGcuaCGUCcGUGGaGGa -3' miRNA: 3'- -GCuGGCUGGCUUua-GCAGcCACC-CCa -5' |
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22187 | 3' | -56 | NC_004927.1 | + | 69819 | 0.66 | 0.772248 |
Target: 5'- cCGACUGAcaCCGGgacugguguagAGUCGgcgGGUGGGGa -3' miRNA: 3'- -GCUGGCU--GGCU-----------UUAGCag-CCACCCCa -5' |
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22187 | 3' | -56 | NC_004927.1 | + | 50053 | 0.67 | 0.762528 |
Target: 5'- aGACUGuccCUGAAAUcaaCGUggaCGGUGGGGUu -3' miRNA: 3'- gCUGGCu--GGCUUUA---GCA---GCCACCCCA- -5' |
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22187 | 3' | -56 | NC_004927.1 | + | 31107 | 0.67 | 0.74273 |
Target: 5'- --cCCGACCGggGaacggauguUCGUCGucGGGGUg -3' miRNA: 3'- gcuGGCUGGCuuU---------AGCAGCcaCCCCA- -5' |
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22187 | 3' | -56 | NC_004927.1 | + | 21331 | 0.68 | 0.71229 |
Target: 5'- gGAgCG-CCGuuGUCGUCGGUGGcGa -3' miRNA: 3'- gCUgGCuGGCuuUAGCAGCCACCcCa -5' |
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22187 | 3' | -56 | NC_004927.1 | + | 6896 | 0.71 | 0.514603 |
Target: 5'- uCGACCGGaaGggGUUGUCGucagaagcGUGGGGc -3' miRNA: 3'- -GCUGGCUggCuuUAGCAGC--------CACCCCa -5' |
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22187 | 3' | -56 | NC_004927.1 | + | 46332 | 0.71 | 0.494663 |
Target: 5'- aGAUU-ACCGAGcgCGUCGGUGGGa- -3' miRNA: 3'- gCUGGcUGGCUUuaGCAGCCACCCca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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