miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22188 3' -51.3 NC_004927.1 + 32217 0.66 0.971725
Target:  5'- gGGUUGUUgACGAuaaccuucaccagcuCCUCGUcguucacGAgGCCGGu -3'
miRNA:   3'- -CCAGCAAgUGCU---------------GGAGCA-------CUaUGGCC- -5'
22188 3' -51.3 NC_004927.1 + 25771 0.66 0.967696
Target:  5'- -cUCGUugaaguucagcUCAacuucccacgccUGACCUCGguaGAUACCGGa -3'
miRNA:   3'- ccAGCA-----------AGU------------GCUGGAGCa--CUAUGGCC- -5'
22188 3' -51.3 NC_004927.1 + 37671 0.66 0.967696
Target:  5'- cGGg-GUUCugGaacGCCUCGUGGUcaACCa- -3'
miRNA:   3'- -CCagCAAGugC---UGGAGCACUA--UGGcc -5'
22188 3' -51.3 NC_004927.1 + 12371 0.66 0.964332
Target:  5'- aGUCGUUCAuCGGCUcCGgcccACCGGa -3'
miRNA:   3'- cCAGCAAGU-GCUGGaGCacuaUGGCC- -5'
22188 3' -51.3 NC_004927.1 + 14589 0.66 0.96073
Target:  5'- uGGagCGUUcCACGGCgCUCGUGGgucgccaGCCGa -3'
miRNA:   3'- -CCa-GCAA-GUGCUG-GAGCACUa------UGGCc -5'
22188 3' -51.3 NC_004927.1 + 21753 0.67 0.958452
Target:  5'- cGUCGUcgUCGCcGCCcgaguuggcgauaGUGAUACCGGc -3'
miRNA:   3'- cCAGCA--AGUGcUGGag-----------CACUAUGGCC- -5'
22188 3' -51.3 NC_004927.1 + 59096 0.67 0.956486
Target:  5'- ---gGUUgACGACCUCGaUGAUGuugcgucCCGGc -3'
miRNA:   3'- ccagCAAgUGCUGGAGC-ACUAU-------GGCC- -5'
22188 3' -51.3 NC_004927.1 + 22554 0.67 0.952789
Target:  5'- uGUCc-UUGCcACCUCGUGAgagGCCGGu -3'
miRNA:   3'- cCAGcaAGUGcUGGAGCACUa--UGGCC- -5'
22188 3' -51.3 NC_004927.1 + 54836 0.67 0.943833
Target:  5'- -uUCGUcUCACGACCUCGUuc--CCGa -3'
miRNA:   3'- ccAGCA-AGUGCUGGAGCAcuauGGCc -5'
22188 3' -51.3 NC_004927.1 + 27526 0.67 0.943833
Target:  5'- uGGUCGgUCACuuCCUCGcaa-ACCGGa -3'
miRNA:   3'- -CCAGCaAGUGcuGGAGCacuaUGGCC- -5'
22188 3' -51.3 NC_004927.1 + 58495 0.68 0.928442
Target:  5'- cGG-CGUUCAuCGGCCUCGguuUGGUcgGCCa- -3'
miRNA:   3'- -CCaGCAAGU-GCUGGAGC---ACUA--UGGcc -5'
22188 3' -51.3 NC_004927.1 + 71798 0.68 0.916858
Target:  5'- aGGUCGUgaACGACCgCGUucucGAacagGCCGGu -3'
miRNA:   3'- -CCAGCAagUGCUGGaGCA----CUa---UGGCC- -5'
22188 3' -51.3 NC_004927.1 + 61712 0.69 0.890547
Target:  5'- cGGUCGcgguUGACCUCGUGGacguUACgGGc -3'
miRNA:   3'- -CCAGCaaguGCUGGAGCACU----AUGgCC- -5'
22188 3' -51.3 NC_004927.1 + 26790 0.69 0.875867
Target:  5'- gGGUCGUUCACuAUCUCGUaGG--UCGGu -3'
miRNA:   3'- -CCAGCAAGUGcUGGAGCA-CUauGGCC- -5'
22188 3' -51.3 NC_004927.1 + 9753 0.7 0.843667
Target:  5'- cGUUGUUCACGGCgaCUCGUGG-GCUGa -3'
miRNA:   3'- cCAGCAAGUGCUG--GAGCACUaUGGCc -5'
22188 3' -51.3 NC_004927.1 + 42798 0.72 0.76965
Target:  5'- gGGUCGUcguuguaucgcuUCACGuCCUCGauGUACCGa -3'
miRNA:   3'- -CCAGCA------------AGUGCuGGAGCacUAUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.