miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22190 3' -61.8 NC_004927.1 + 19860 0.66 0.477984
Target:  5'- aGCaGAuaACCGCCG-CUggCGCGGCUCa -3'
miRNA:   3'- cCGaCU--UGGCGGCuGGa-GCGCCGGGg -5'
22190 3' -61.8 NC_004927.1 + 42513 0.67 0.420701
Target:  5'- cGGCUGAAucggucgcgggUCGCCggacugauuuuuguGACCUCGCccGUCCCc -3'
miRNA:   3'- -CCGACUU-----------GGCGG--------------CUGGAGCGc-CGGGG- -5'
22190 3' -61.8 NC_004927.1 + 35794 0.68 0.405965
Target:  5'- aGGCcGAGCCGcCCGACCgagcuacgucCGUGGaggacgCCCa -3'
miRNA:   3'- -CCGaCUUGGC-GGCUGGa---------GCGCCg-----GGG- -5'
22190 3' -61.8 NC_004927.1 + 24130 0.69 0.348837
Target:  5'- uGUUGuccCCGUCGuCCgUGUGGCCCCg -3'
miRNA:   3'- cCGACuu-GGCGGCuGGaGCGCCGGGG- -5'
22190 3' -61.8 NC_004927.1 + 71951 0.73 0.197983
Target:  5'- gGGCgcgGAGCCGCUGACgacuaCUCcuaCGGCCUCa -3'
miRNA:   3'- -CCGa--CUUGGCGGCUG-----GAGc--GCCGGGG- -5'
22190 3' -61.8 NC_004927.1 + 70367 0.74 0.170419
Target:  5'- -aUUGAGCCGgauUCGAUgCUUGCGGCCCCa -3'
miRNA:   3'- ccGACUUGGC---GGCUG-GAGCGCCGGGG- -5'
22190 3' -61.8 NC_004927.1 + 70651 0.76 0.110105
Target:  5'- cGCUgGAGCCGCCGGgUggUgGUGGCCCCg -3'
miRNA:   3'- cCGA-CUUGGCGGCUgG--AgCGCCGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.