miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22192 3' -55.9 NC_004927.1 + 25513 0.66 0.772823
Target:  5'- --uUCGCCGCC--CUCGgagAGCGGGaCGg -3'
miRNA:   3'- guuAGCGGCGGacGAGU---UCGUCCaGC- -5'
22192 3' -55.9 NC_004927.1 + 26801 0.66 0.751765
Target:  5'- ---cCGCCGCCUucgggucGUUCAcuaucucGUAGGUCGg -3'
miRNA:   3'- guuaGCGGCGGA-------CGAGUu------CGUCCAGC- -5'
22192 3' -55.9 NC_004927.1 + 20199 0.66 0.749731
Target:  5'- -cGUCgGCCaCCUuuucgauuccaaacGCaUCGAGCAGGUCGa -3'
miRNA:   3'- guUAG-CGGcGGA--------------CG-AGUUCGUCCAGC- -5'
22192 3' -55.9 NC_004927.1 + 62442 0.66 0.74155
Target:  5'- aCGGUCGuauucccCCGCCUGUcCAcacGGCAGGUa- -3'
miRNA:   3'- -GUUAGC-------GGCGGACGaGU---UCGUCCAgc -5'
22192 3' -55.9 NC_004927.1 + 74213 0.67 0.711361
Target:  5'- ---aCGauaCGaCCUGCUUGAGCAGG-CGg -3'
miRNA:   3'- guuaGCg--GC-GGACGAGUUCGUCCaGC- -5'
22192 3' -55.9 NC_004927.1 + 21458 0.68 0.636388
Target:  5'- aCAGUUGCCGag-GCUCAc-CGGGUCGu -3'
miRNA:   3'- -GUUAGCGGCggaCGAGUucGUCCAGC- -5'
22192 3' -55.9 NC_004927.1 + 9361 0.7 0.497703
Target:  5'- uCAAUCGCCGCCucagcgauUGCccaaucgggaaucUCGucggguaacuccGGCGGGUCGa -3'
miRNA:   3'- -GUUAGCGGCGG--------ACG-------------AGU------------UCGUCCAGC- -5'
22192 3' -55.9 NC_004927.1 + 23243 0.71 0.478576
Target:  5'- gAGUCGCCGUCUccGCUCGgucggggagAGCGGG-CGu -3'
miRNA:   3'- gUUAGCGGCGGA--CGAGU---------UCGUCCaGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.