Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22193 | 3' | -55.5 | NC_004927.1 | + | 68740 | 0.81 | 0.113952 |
Target: 5'- uGAUGAGGACgaaGCCAaccCCCUCGAUGUGg -3' miRNA: 3'- uCUACUCCUG---UGGU---GGGAGCUACGCa -5' |
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22193 | 3' | -55.5 | NC_004927.1 | + | 72338 | 0.81 | 0.12007 |
Target: 5'- gAGAUGGcguucuuGGaagaccagaGCGCCACCCUCGAUGCGUa -3' miRNA: 3'- -UCUACU-------CC---------UGUGGUGGGAGCUACGCA- -5' |
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22193 | 3' | -55.5 | NC_004927.1 | + | 41344 | 0.74 | 0.355513 |
Target: 5'- aGGccGAGGuGCGCCACCgagUUCGAUGCGUu -3' miRNA: 3'- -UCuaCUCC-UGUGGUGG---GAGCUACGCA- -5' |
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22193 | 3' | -55.5 | NC_004927.1 | + | 61780 | 0.73 | 0.361355 |
Target: 5'- cGGUGAGGACAgCCcgcucacccgcaacAUCCUCGAUGCu- -3' miRNA: 3'- uCUACUCCUGU-GG--------------UGGGAGCUACGca -5' |
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22193 | 3' | -55.5 | NC_004927.1 | + | 54258 | 0.7 | 0.53543 |
Target: 5'- --cUGAGGAgGaaAUCCUCGAUGCGa -3' miRNA: 3'- ucuACUCCUgUggUGGGAGCUACGCa -5' |
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22193 | 3' | -55.5 | NC_004927.1 | + | 50880 | 0.68 | 0.674426 |
Target: 5'- cGAgGAGGGgGCCACCUauUCGGUGUc- -3' miRNA: 3'- uCUaCUCCUgUGGUGGG--AGCUACGca -5' |
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22193 | 3' | -55.5 | NC_004927.1 | + | 30942 | 0.68 | 0.685112 |
Target: 5'- cGAcuUGAGGACGuuuuCCAUCgaacgCUCGAUGCGg -3' miRNA: 3'- uCU--ACUCCUGU----GGUGG-----GAGCUACGCa -5' |
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22193 | 3' | -55.5 | NC_004927.1 | + | 35744 | 0.67 | 0.727267 |
Target: 5'- cGGUG-GGAuuguCACCAucUCCUCGGUGUGg -3' miRNA: 3'- uCUACuCCU----GUGGU--GGGAGCUACGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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