miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22193 5' -54.6 NC_004927.1 + 65621 0.71 0.54474
Target:  5'- -gAAGCCCCAcacGCAGggGcGCUCGacgcugguguUCCa -3'
miRNA:   3'- agUUCGGGGU---UGUCuuCaCGGGC----------AGG- -5'
22193 5' -54.6 NC_004927.1 + 29373 0.7 0.608932
Target:  5'- -gAGGCCCCAACAGguGUGgcacUUCGUCg -3'
miRNA:   3'- agUUCGGGGUUGUCuuCAC----GGGCAGg -5'
22193 5' -54.6 NC_004927.1 + 56385 0.66 0.815749
Target:  5'- aCAAGCCCgCAGagacCAGAccgGCUCGUUCg -3'
miRNA:   3'- aGUUCGGG-GUU----GUCUucaCGGGCAGG- -5'
22193 5' -54.6 NC_004927.1 + 20319 0.66 0.841527
Target:  5'- --cGGCCCCAcCGGAGGgaGCgucgucgUCGUCCa -3'
miRNA:   3'- aguUCGGGGUuGUCUUCa-CG-------GGCAGG- -5'
22193 5' -54.6 NC_004927.1 + 7657 0.66 0.842385
Target:  5'- uUCGcacAGCUCCGGCAGuAGUaucGCuuGUUCg -3'
miRNA:   3'- -AGU---UCGGGGUUGUCuUCA---CGggCAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.