Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22194 | 3' | -54.9 | NC_004927.1 | + | 8168 | 0.76 | 0.259799 |
Target: 5'- cACACCGGAUGAACCGGGucguCgGGCUUcagUCg -3' miRNA: 3'- -UGUGGUCUACUUGGUCU----GgCCGAG---AG- -5' |
|||||||
22194 | 3' | -54.9 | NC_004927.1 | + | 22012 | 0.76 | 0.273258 |
Target: 5'- uACACCAGGUagaGAGCCuacauCCGGUUCUCa -3' miRNA: 3'- -UGUGGUCUA---CUUGGucu--GGCCGAGAG- -5' |
|||||||
22194 | 3' | -54.9 | NC_004927.1 | + | 56382 | 0.73 | 0.419472 |
Target: 5'- aGCcCgCAGA--GACCAGACCGGCUCg- -3' miRNA: 3'- -UGuG-GUCUacUUGGUCUGGCCGAGag -5' |
|||||||
22194 | 3' | -54.9 | NC_004927.1 | + | 26741 | 0.72 | 0.448063 |
Target: 5'- cGCACuCGGGa----CAGACCGGCUCUCc -3' miRNA: 3'- -UGUG-GUCUacuugGUCUGGCCGAGAG- -5' |
|||||||
22194 | 3' | -54.9 | NC_004927.1 | + | 47456 | 0.68 | 0.680143 |
Target: 5'- aACACCAGAUGAAgaCGcuCCGGUUCa- -3' miRNA: 3'- -UGUGGUCUACUUg-GUcuGGCCGAGag -5' |
|||||||
22194 | 3' | -54.9 | NC_004927.1 | + | 56682 | 0.67 | 0.76413 |
Target: 5'- uCACCGGAUGAuuuACCuccccGACgCGGUUCa- -3' miRNA: 3'- uGUGGUCUACU---UGGu----CUG-GCCGAGag -5' |
|||||||
22194 | 3' | -54.9 | NC_004927.1 | + | 1346 | 0.66 | 0.774147 |
Target: 5'- aACACCGGGaaacacguucgGGGCCGGGCagGGUUUUCa -3' miRNA: 3'- -UGUGGUCUa----------CUUGGUCUGg-CCGAGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home