miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22195 3' -43.4 NC_004928.1 + 150864 0.66 1
Target:  5'- uUCUGGUuaacuuguGCAGUuguuGCAAUAcgagcaAUACCGCg -3'
miRNA:   3'- -AGAUCGu-------UGUCAu---UGUUAU------UGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 22969 0.66 1
Target:  5'- uUCUAcaCAAuCAGUAGCuuUAgcACGCCACg -3'
miRNA:   3'- -AGAUc-GUU-GUCAUUGuuAU--UGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 93182 0.66 1
Target:  5'- ---cGCAugAGUAACAAUAcAUAUCAa -3'
miRNA:   3'- agauCGUugUCAUUGUUAU-UGUGGUg -5'
22195 3' -43.4 NC_004928.1 + 149987 0.66 1
Target:  5'- cUUAGCAGgAGUuACuGUGACugCAUu -3'
miRNA:   3'- aGAUCGUUgUCAuUGuUAUUGugGUG- -5'
22195 3' -43.4 NC_004928.1 + 97212 0.67 1
Target:  5'- ----uCAACAGUGACAccgccugGUAACAUCAUa -3'
miRNA:   3'- agaucGUUGUCAUUGU-------UAUUGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 133967 0.67 0.999999
Target:  5'- ---cGCAACAGU-----UAACGCCACc -3'
miRNA:   3'- agauCGUUGUCAuuguuAUUGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 92728 0.67 0.999999
Target:  5'- -gUAGgAACAGUuACAAUuAACACCuCa -3'
miRNA:   3'- agAUCgUUGUCAuUGUUA-UUGUGGuG- -5'
22195 3' -43.4 NC_004928.1 + 152106 0.67 0.999999
Target:  5'- --gAGCAugGGg--UAAUAGCGCUACa -3'
miRNA:   3'- agaUCGUugUCauuGUUAUUGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 107387 0.67 0.999998
Target:  5'- --aAGUAuaaauACAGuUGACAAUGACGCUGCc -3'
miRNA:   3'- agaUCGU-----UGUC-AUUGUUAUUGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 103766 0.68 0.999994
Target:  5'- cUUUAGUGACAGUuu---UAGCAUCACg -3'
miRNA:   3'- -AGAUCGUUGUCAuuguuAUUGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 159933 0.69 0.999988
Target:  5'- --aAGCAAUAGUAAUAAUuuCACgUACg -3'
miRNA:   3'- agaUCGUUGUCAUUGUUAuuGUG-GUG- -5'
22195 3' -43.4 NC_004928.1 + 88872 0.69 0.999976
Target:  5'- --aGGUGAUGGUGAUAAUAaaaACACCAUc -3'
miRNA:   3'- agaUCGUUGUCAUUGUUAU---UGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 46114 0.7 0.999855
Target:  5'- --gAGCAACAGUAGCuuUAACuCCu- -3'
miRNA:   3'- agaUCGUUGUCAUUGuuAUUGuGGug -5'
22195 3' -43.4 NC_004928.1 + 27281 0.72 0.999358
Target:  5'- gUUAGCGAUAGUAAU----ACGCCAUa -3'
miRNA:   3'- aGAUCGUUGUCAUUGuuauUGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 48587 0.72 0.999007
Target:  5'- gUCUGGCucGACAGUcucccaucgAGCAG-AAUACCACg -3'
miRNA:   3'- -AGAUCG--UUGUCA---------UUGUUaUUGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 157079 0.73 0.998776
Target:  5'- --gAGCAAUAGUAGCuu---CACCACc -3'
miRNA:   3'- agaUCGUUGUCAUUGuuauuGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 56761 0.73 0.997794
Target:  5'- uUUUAGCAGCAGUcACAAUcAUugGCCAUg -3'
miRNA:   3'- -AGAUCGUUGUCAuUGUUAuUG--UGGUG- -5'
22195 3' -43.4 NC_004928.1 + 108605 0.73 0.997347
Target:  5'- uUCcAGCAuaauuuCAGUAGCAAgAAUACCGCu -3'
miRNA:   3'- -AGaUCGUu-----GUCAUUGUUaUUGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 113258 0.74 0.996826
Target:  5'- --aAGCAACAGUAGuaacUAAUAAUGCUACa -3'
miRNA:   3'- agaUCGUUGUCAUU----GUUAUUGUGGUG- -5'
22195 3' -43.4 NC_004928.1 + 11661 0.76 0.987298
Target:  5'- aUUAGCGAUAcGUcuuGCAAUAGCAUCACg -3'
miRNA:   3'- aGAUCGUUGU-CAu--UGUUAUUGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.