miRNA display CGI

Results 1 - 12 of 12 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
222	3'	-55.6	AC_000008.1	+	4224	0.66	0.585339
	Target:  5'- gGAGGUAGcACCacUGCA-GAGCUUCaUGCu -3' miRNA:   3'- gCUCCAUU-UGG--ACGUcCUCGAGG-GCG- -5'
222	3'	-55.6	AC_000008.1	+	13335	0.66	0.556262
	Target:  5'- uGAuGGUGcgcAGCCUGUGGagugaaaacuucaccGAGCUgCCGCg -3' miRNA:   3'- gCU-CCAU---UUGGACGUC---------------CUCGAgGGCG- -5'
222	3'	-55.6	AC_000008.1	+	8343	0.67	0.529802
	Target:  5'- aGAuGG-GAGCUguccaugGUcuGGAGCUCCCGCg -3' miRNA:   3'- gCU-CCaUUUGGa------CGu-CCUCGAGGGCG- -5'
222	3'	-55.6	AC_000008.1	+	13612	0.67	0.486805
	Target:  5'- aGAGGc-GGCgCUGCgaaAGGAaaGCUUCCGCa -3' miRNA:   3'- gCUCCauUUG-GACG---UCCU--CGAGGGCG- -5'
222	3'	-55.6	AC_000008.1	+	27458	0.67	0.486805
	Target:  5'- aGGGGcgcAGCUUGCGGGcGGCUUUCGUc -3' miRNA:   3'- gCUCCau-UUGGACGUCC-UCGAGGGCG- -5'
222	3'	-55.6	AC_000008.1	+	11343	0.67	0.476311
	Target:  5'- gCGAGGgagagGAGCCcgaggagaUGCGGGAucgaaaGUUCCaCGCa -3' miRNA:   3'- -GCUCCa----UUUGG--------ACGUCCU------CGAGG-GCG- -5'
222	3'	-55.6	AC_000008.1	+	12625	0.69	0.415893
	Target:  5'- uGGGGcgAuuCCUGCAGGcGUaCCUGCa -3' miRNA:   3'- gCUCCa-UuuGGACGUCCuCGaGGGCG- -5'
222	3'	-55.6	AC_000008.1	+	27536	0.69	0.369284
	Target:  5'- gCGAGGUAuucagcucaacGACgaGuCGGuGAGCUCCuCGCu -3' miRNA:   3'- -GCUCCAU-----------UUGgaC-GUC-CUCGAGG-GCG- -5'
222	3'	-55.6	AC_000008.1	+	23254	0.7	0.343087
	Target:  5'- -cAGGUAcGCCUGCAGGAaucGC-CCCa- -3' miRNA:   3'- gcUCCAUuUGGACGUCCU---CGaGGGcg -5'
222	3'	-55.6	AC_000008.1	+	12017	0.71	0.310285
	Target:  5'- uGAGcGUGAGCCgGCGGcgcGAGCUCagcgaCCGCg -3' miRNA:   3'- gCUC-CAUUUGGaCGUC---CUCGAG-----GGCG- -5'
222	3'	-55.6	AC_000008.1	+	8381	0.71	0.310285
	Target:  5'- -cAGGUcag---GCGGGAGCUCCUGCa -3' miRNA:   3'- gcUCCAuuuggaCGUCCUCGAGGGCG- -5'
222	3'	-55.6	AC_000008.1	+	27489	1.11	0.000385
	Target:  5'- gCGAGGUAAACCUGCAGGAGCUCCCGCc -3' miRNA:   3'- -GCUCCAUUUGGACGUCCUCGAGGGCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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