miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2222 3' -64.1 NC_001405.1 + 5663 0.66 0.205367
Target:  5'- aCCUGGCUcguGGaaugcgagaccgucUGCGgGGCCUGcGGCGCg -3'
miRNA:   3'- -GGACCGG---UC--------------GCGCgUCGGGCcUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 26526 0.66 0.206968
Target:  5'- --gGGUCGGCGaacagGCAGUgCCGGcGGCGCc -3'
miRNA:   3'- ggaCCGGUCGCg----CGUCG-GGCC-UCGCG- -5'
2222 3' -64.1 NC_001405.1 + 17412 0.72 0.08029
Target:  5'- uCCUGGaaCGGCGCG-GGCgCCGGGGgGCu -3'
miRNA:   3'- -GGACCg-GUCGCGCgUCG-GGCCUCgCG- -5'
2222 3' -64.1 NC_001405.1 + 22656 0.69 0.121495
Target:  5'- gUUGGUgaUGGUGCGCAGCCUguGGAGUGa -3'
miRNA:   3'- gGACCG--GUCGCGCGUCGGG--CCUCGCg -5'
2222 3' -64.1 NC_001405.1 + 16043 0.69 0.139149
Target:  5'- --cGGCCGcguuuGUGCGCGcCCCaGGGCGCg -3'
miRNA:   3'- ggaCCGGU-----CGCGCGUcGGGcCUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 11523 0.68 0.150438
Target:  5'- --cGGCCGccacgugugcGCGCGCGGgacuaauCCCGGuccGCGCg -3'
miRNA:   3'- ggaCCGGU----------CGCGCGUC-------GGGCCu--CGCG- -5'
2222 3' -64.1 NC_001405.1 + 25533 0.8 0.017727
Target:  5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3'
miRNA:   3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 5464 0.79 0.022325
Target:  5'- aCCUGGCCGaCGCGCAGggcgaagaCCGGcAGCGCu -3'
miRNA:   3'- -GGACCGGUcGCGCGUCg-------GGCC-UCGCG- -5'
2222 3' -64.1 NC_001405.1 + 6453 0.69 0.131821
Target:  5'- aCCgcGGUUGGCGCGUgcaccugguGCCCGacGAGCGCa -3'
miRNA:   3'- -GGa-CCGGUCGCGCGu--------CGGGC--CUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 18543 0.67 0.176936
Target:  5'- gCUGGcCCAGCacuccgGUAGCCauGGGCGCg -3'
miRNA:   3'- gGACC-GGUCGcg----CGUCGGgcCUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 8697 0.67 0.186491
Target:  5'- uCCU-GCCcGCGCGCGGCgCCGacGUGCc -3'
miRNA:   3'- -GGAcCGGuCGCGCGUCG-GGCcuCGCG- -5'
2222 3' -64.1 NC_001405.1 + 5398 1.12 0.000043
Target:  5'- cCCUGGCCAGCGCGCAGCCCGGAGCGCa -3'
miRNA:   3'- -GGACCGGUCGCGCGUCGGGCCUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 12211 0.67 0.18023
Target:  5'- uCC-GGCCccagcugccuccagGGCGCGuCGGCuuGGggcccAGCGCa -3'
miRNA:   3'- -GGaCCGG--------------UCGCGC-GUCGggCC-----UCGCG- -5'
2222 3' -64.1 NC_001405.1 + 22785 0.77 0.030976
Target:  5'- gCUGGCCAGCGUGCAccaCCCGGcgcugauaguguuccAGUGCu -3'
miRNA:   3'- gGACCGGUCGCGCGUc--GGGCC---------------UCGCG- -5'
2222 3' -64.1 NC_001405.1 + 28518 0.66 0.206968
Target:  5'- --aGGUguGgGCGCAGCaaCCGGuGaCGCa -3'
miRNA:   3'- ggaCCGguCgCGCGUCG--GGCCuC-GCG- -5'
2222 3' -64.1 NC_001405.1 + 16329 0.66 0.206968
Target:  5'- --cGGCCGcCGCaGCAGCCgCGGccauuAGUGCu -3'
miRNA:   3'- ggaCCGGUcGCG-CGUCGG-GCC-----UCGCG- -5'
2222 3' -64.1 NC_001405.1 + 7197 0.66 0.206968
Target:  5'- gCCUGGUaGGCGCaGCAuCCCuuuucuacgGGuAGCGCg -3'
miRNA:   3'- -GGACCGgUCGCG-CGUcGGG---------CC-UCGCG- -5'
2222 3' -64.1 NC_001405.1 + 16104 0.66 0.206433
Target:  5'- --cGGCCAuucagaccgugguGCGCGgAGCCCGGcGUuauGCu -3'
miRNA:   3'- ggaCCGGU-------------CGCGCgUCGGGCCuCG---CG- -5'
2222 3' -64.1 NC_001405.1 + 23242 0.67 0.196496
Target:  5'- ---aGCCAcaaCGCGCAGCCCGuGGGCu- -3'
miRNA:   3'- ggacCGGUc--GCGCGUCGGGC-CUCGcg -5'
2222 3' -64.1 NC_001405.1 + 10357 0.69 0.124851
Target:  5'- --gGGCCAGCGUagGguGgCCGGGGCu- -3'
miRNA:   3'- ggaCCGGUCGCG--CguCgGGCCUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.