miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2222 3' -64.1 NC_001405.1 + 16411 0.71 0.087289
Target:  5'- --cGGCCuGCGCGU-GCCCGu-GCGCa -3'
miRNA:   3'- ggaCCGGuCGCGCGuCGGGCcuCGCG- -5'
2222 3' -64.1 NC_001405.1 + 17412 0.72 0.08029
Target:  5'- uCCUGGaaCGGCGCG-GGCgCCGGGGgGCu -3'
miRNA:   3'- -GGACCg-GUCGCGCgUCG-GGCCUCgCG- -5'
2222 3' -64.1 NC_001405.1 + 18543 0.67 0.176936
Target:  5'- gCUGGcCCAGCacuccgGUAGCCauGGGCGCg -3'
miRNA:   3'- gGACC-GGUCGcg----CGUCGGgcCUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 21890 0.66 0.217918
Target:  5'- --cGGCCGGuCGCG-AGaCUgGGGGCGUa -3'
miRNA:   3'- ggaCCGGUC-GCGCgUC-GGgCCUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 22309 0.67 0.186491
Target:  5'- uCCgcaGCCacAGUGCGCAGauuaGGAGCGCc -3'
miRNA:   3'- -GGac-CGG--UCGCGCGUCggg-CCUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 22656 0.69 0.121495
Target:  5'- gUUGGUgaUGGUGCGCAGCCUguGGAGUGa -3'
miRNA:   3'- gGACCG--GUCGCGCGUCGGG--CCUCGCg -5'
2222 3' -64.1 NC_001405.1 + 22785 0.77 0.030976
Target:  5'- gCUGGCCAGCGUGCAccaCCCGGcgcugauaguguuccAGUGCu -3'
miRNA:   3'- gGACCGGUCGCGCGUc--GGGCC---------------UCGCG- -5'
2222 3' -64.1 NC_001405.1 + 23242 0.67 0.196496
Target:  5'- ---aGCCAcaaCGCGCAGCCCGuGGGCu- -3'
miRNA:   3'- ggacCGGUc--GCGCGUCGGGC-CUCGcg -5'
2222 3' -64.1 NC_001405.1 + 23837 0.66 0.212382
Target:  5'- -aUGGCCGcgggcuggguGUGCGCGGCaCC--AGCGCa -3'
miRNA:   3'- ggACCGGU----------CGCGCGUCG-GGccUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 25029 0.68 0.146848
Target:  5'- gCUGGCUugAGaCGCGCgAGCCUgccgacuuggaGGAGCGa -3'
miRNA:   3'- gGACCGG--UC-GCGCG-UCGGG-----------CCUCGCg -5'
2222 3' -64.1 NC_001405.1 + 25361 0.68 0.156599
Target:  5'- aCCUGGCaaacggccaugGGCGUGUGGCagcaaugccuggaGGAGCGCa -3'
miRNA:   3'- -GGACCGg----------UCGCGCGUCGgg-----------CCUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 25533 0.8 0.017727
Target:  5'- ---cGCCAgGUGCGCGGCCaCGGAGCGCu -3'
miRNA:   3'- ggacCGGU-CGCGCGUCGG-GCCUCGCG- -5'
2222 3' -64.1 NC_001405.1 + 26526 0.66 0.206968
Target:  5'- --gGGUCGGCGaacagGCAGUgCCGGcGGCGCc -3'
miRNA:   3'- ggaCCGGUCGCg----CGUCG-GGCC-UCGCG- -5'
2222 3' -64.1 NC_001405.1 + 28518 0.66 0.206968
Target:  5'- --aGGUguGgGCGCAGCaaCCGGuGaCGCa -3'
miRNA:   3'- ggaCCGguCgCGCGUCG--GGCCuC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.