miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2223 3' -51.5 NC_001405.1 + 25248 0.66 0.812231
Target:  5'- aCCUUGGAAuUUUGCACgaaaaCCgCCUCGg -3'
miRNA:   3'- gGGAAUUUUcAGACGUGac---GG-GGAGC- -5'
2223 3' -51.5 NC_001405.1 + 24013 0.66 0.791918
Target:  5'- gCUCggggguGGUUUcGCGCUGCUCCUCu -3'
miRNA:   3'- -GGGaauuu-UCAGA-CGUGACGGGGAGc -5'
2223 3' -51.5 NC_001405.1 + 1402 0.66 0.770857
Target:  5'- aCCCggu--GGUCccGCugUGCCCCa-- -3'
miRNA:   3'- -GGGaauuuUCAGa-CGugACGGGGagc -5'
2223 3' -51.5 NC_001405.1 + 11140 0.67 0.76008
Target:  5'- gCCCUgcau-GUCUGcCGCUGCUCUUg- -3'
miRNA:   3'- -GGGAauuuuCAGAC-GUGACGGGGAgc -5'
2223 3' -51.5 NC_001405.1 + 25859 0.68 0.658094
Target:  5'- aCCUUu-GAG-CUGCAggGUCCCUCGc -3'
miRNA:   3'- gGGAAuuUUCaGACGUgaCGGGGAGC- -5'
2223 3' -51.5 NC_001405.1 + 5573 1.11 0.001038
Target:  5'- gCCCUUAAAAGUCUGCACUGCCCCUCGu -3'
miRNA:   3'- -GGGAAUUUUCAGACGUGACGGGGAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.