miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2223 5' -57.3 NC_001405.1 + 6636 0.66 0.466795
Target:  5'- --gCGGGcGGCAAGC-GCGCGCUcguauGGGu -3'
miRNA:   3'- gagGUUC-CCGUUCGaCGCGCGGu----UCC- -5'
2223 5' -57.3 NC_001405.1 + 15168 0.66 0.466795
Target:  5'- -gCCAcacGGGCGgaggAGaaGCGCGCUGAGGc -3'
miRNA:   3'- gaGGUu--CCCGU----UCgaCGCGCGGUUCC- -5'
2223 5' -57.3 NC_001405.1 + 4308 0.66 0.446459
Target:  5'- uUUCAGuaGCAAGCUGauUGCCAGGGg -3'
miRNA:   3'- gAGGUUccCGUUCGACgcGCGGUUCC- -5'
2223 5' -57.3 NC_001405.1 + 10767 0.66 0.436478
Target:  5'- uUCCAGGcGCGgcGGCUGCuGCGCUAGc- -3'
miRNA:   3'- gAGGUUCcCGU--UCGACG-CGCGGUUcc -5'
2223 5' -57.3 NC_001405.1 + 12538 0.67 0.416909
Target:  5'- -gCguGGGGUuuGC-GCGCGCCGGGa -3'
miRNA:   3'- gaGguUCCCGuuCGaCGCGCGGUUCc -5'
2223 5' -57.3 NC_001405.1 + 5330 0.68 0.335021
Target:  5'- ---aAGGGGUgcgcuccGGGCUGCGCgcugGCCAGGGu -3'
miRNA:   3'- gaggUUCCCG-------UUCGACGCG----CGGUUCC- -5'
2223 5' -57.3 NC_001405.1 + 26239 0.69 0.322705
Target:  5'- --gCAAGGGCccgcggcugcugauaGGGCUGCGgCGgCGGGGg -3'
miRNA:   3'- gagGUUCCCG---------------UUCGACGC-GCgGUUCC- -5'
2223 5' -57.3 NC_001405.1 + 15705 0.69 0.303708
Target:  5'- --gUggGGGCuGGCggGCGCGCCAAa- -3'
miRNA:   3'- gagGuuCCCGuUCGa-CGCGCGGUUcc -5'
2223 5' -57.3 NC_001405.1 + 25301 0.69 0.29605
Target:  5'- -cUCAAGGGCGAG--GCGCGCCGc-- -3'
miRNA:   3'- gaGGUUCCCGUUCgaCGCGCGGUucc -5'
2223 5' -57.3 NC_001405.1 + 23546 0.69 0.281187
Target:  5'- ---gAAGGGCAuggaGGCUGCGCGCgCGuugauGGa -3'
miRNA:   3'- gaggUUCCCGU----UCGACGCGCG-GUu----CC- -5'
2223 5' -57.3 NC_001405.1 + 5566 0.7 0.24663
Target:  5'- uUCCGGGGaGUAGGCaucCGCGCCGcAGGc -3'
miRNA:   3'- gAGGUUCC-CGUUCGac-GCGCGGU-UCC- -5'
2223 5' -57.3 NC_001405.1 + 8646 0.71 0.221581
Target:  5'- -gCCGcgcgcGGGCAGgagcugguGCUGCGCGCgGAGGu -3'
miRNA:   3'- gaGGUu----CCCGUU--------CGACGCGCGgUUCC- -5'
2223 5' -57.3 NC_001405.1 + 25099 0.74 0.134277
Target:  5'- cCUCCAAGucGGCAGGCUcGCGCGUcuCAAGc -3'
miRNA:   3'- -GAGGUUC--CCGUUCGA-CGCGCG--GUUCc -5'
2223 5' -57.3 NC_001405.1 + 5536 1.11 0.000222
Target:  5'- cCUCCAAGGGCAAGCUGCGCGCCAAGGg -3'
miRNA:   3'- -GAGGUUCCCGUUCGACGCGCGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.