miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22232 3' -56.7 NC_005045.1 + 42374 1.12 0.00027
Target:  5'- gGAUGAGCAGCACAGCCCGUACCCAGCa -3'
miRNA:   3'- -CUACUCGUCGUGUCGGGCAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 311 1.12 0.00027
Target:  5'- gGAUGAGCAGCACAGCCCGUACCCAGCa -3'
miRNA:   3'- -CUACUCGUCGUGUCGGGCAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 27796 0.76 0.125501
Target:  5'- cGUGuauCAGCuACAGCCCGUGgCCGGCg -3'
miRNA:   3'- cUACuc-GUCG-UGUCGGGCAUgGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 30086 0.74 0.161865
Target:  5'- cGUGGGCAGCGCGGUUCGcaugAUCCAGg -3'
miRNA:   3'- cUACUCGUCGUGUCGGGCa---UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 32499 0.73 0.185955
Target:  5'- --cGAGCuGCACAGCCUGUcagGCCguaAGCu -3'
miRNA:   3'- cuaCUCGuCGUGUCGGGCA---UGGg--UCG- -5'
22232 3' -56.7 NC_005045.1 + 4490 0.73 0.185955
Target:  5'- --cGGGCAGCACugcgggacGGCCCGUGcuguCCCAaGCu -3'
miRNA:   3'- cuaCUCGUCGUG--------UCGGGCAU----GGGU-CG- -5'
22232 3' -56.7 NC_005045.1 + 40491 0.73 0.188013
Target:  5'- uGAUGAGCugugcgcccacauagAGCGCGGUgaGUACCgCAGCa -3'
miRNA:   3'- -CUACUCG---------------UCGUGUCGggCAUGG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 26044 0.73 0.207451
Target:  5'- cGAUGcuGGUGGCGCAGCaCCGUGgCgAGCu -3'
miRNA:   3'- -CUAC--UCGUCGUGUCG-GGCAUgGgUCG- -5'
22232 3' -56.7 NC_005045.1 + 11249 0.72 0.218985
Target:  5'- -cUGGcGCAGCAU-GCCauccaGUACCCGGCg -3'
miRNA:   3'- cuACU-CGUCGUGuCGGg----CAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 39668 0.72 0.231061
Target:  5'- -cUGGGCGGCACgcuuGGCCCGUACauCCAcGUc -3'
miRNA:   3'- cuACUCGUCGUG----UCGGGCAUG--GGU-CG- -5'
22232 3' -56.7 NC_005045.1 + 26882 0.72 0.237308
Target:  5'- cGGUGccGUAG-GCGGCCCGcucUGCCCAGCg -3'
miRNA:   3'- -CUACu-CGUCgUGUCGGGC---AUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 4361 0.71 0.250224
Target:  5'- --cGGGUAGUGCAGCCCGagGCUaAGCg -3'
miRNA:   3'- cuaCUCGUCGUGUCGGGCa-UGGgUCG- -5'
22232 3' -56.7 NC_005045.1 + 163 0.71 0.250224
Target:  5'- aAUGGGCAGCGagggcagggaAGCCCucgccACCCGGCg -3'
miRNA:   3'- cUACUCGUCGUg---------UCGGGca---UGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 42226 0.71 0.250224
Target:  5'- aAUGGGCAGCGagggcagggaAGCCCucgccACCCGGCg -3'
miRNA:   3'- cUACUCGUCGUg---------UCGGGca---UGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 34829 0.71 0.269976
Target:  5'- --cGGGCGGCgcagggggaugaaGCGGCCCuucgaGUGCuCCAGCa -3'
miRNA:   3'- cuaCUCGUCG-------------UGUCGGG-----CAUG-GGUCG- -5'
22232 3' -56.7 NC_005045.1 + 2281 0.71 0.277791
Target:  5'- aGGUaAGCAGCgGCGGCCagGUAgCCGGCa -3'
miRNA:   3'- -CUAcUCGUCG-UGUCGGg-CAUgGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 34412 0.71 0.285051
Target:  5'- cGUGAGCaccAGCuCGGcCCCGUugCaCAGCg -3'
miRNA:   3'- cUACUCG---UCGuGUC-GGGCAugG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 38218 0.71 0.285051
Target:  5'- -cUGAGCGGCugGGCCUGcUACaUgAGCu -3'
miRNA:   3'- cuACUCGUCGugUCGGGC-AUG-GgUCG- -5'
22232 3' -56.7 NC_005045.1 + 4414 0.7 0.292459
Target:  5'- -uUGGGaCAGCACGGgCCGUcCCgCAGUg -3'
miRNA:   3'- cuACUC-GUCGUGUCgGGCAuGG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 12168 0.7 0.292459
Target:  5'- gGGUGAGUGGCACuGGCCCaccaucACCgAGCu -3'
miRNA:   3'- -CUACUCGUCGUG-UCGGGca----UGGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.