Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22232 | 3' | -56.7 | NC_005045.1 | + | 152 | 0.68 | 0.402371 |
Target: 5'- cGGUGGcGUGGCugcccauCGGCUCaUACCCAGCg -3' miRNA: 3'- -CUACU-CGUCGu------GUCGGGcAUGGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 163 | 0.71 | 0.250224 |
Target: 5'- aAUGGGCAGCGagggcagggaAGCCCucgccACCCGGCg -3' miRNA: 3'- cUACUCGUCGUg---------UCGGGca---UGGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 311 | 1.12 | 0.00027 |
Target: 5'- gGAUGAGCAGCACAGCCCGUACCCAGCa -3' miRNA: 3'- -CUACUCGUCGUGUCGGGCAUGGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 2281 | 0.71 | 0.277791 |
Target: 5'- aGGUaAGCAGCgGCGGCCagGUAgCCGGCa -3' miRNA: 3'- -CUAcUCGUCG-UGUCGGg-CAUgGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 2826 | 0.66 | 0.502852 |
Target: 5'- uGAUGAGUccagcgaugGGUGCAGCCUugGCggCCAGCg -3' miRNA: 3'- -CUACUCG---------UCGUGUCGGGcaUG--GGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 3174 | 0.68 | 0.42049 |
Target: 5'- aGAUGGGaCGgccauucGCACAGCCUuugcgGUAUUCAGCg -3' miRNA: 3'- -CUACUC-GU-------CGUGUCGGG-----CAUGGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 4361 | 0.71 | 0.250224 |
Target: 5'- --cGGGUAGUGCAGCCCGagGCUaAGCg -3' miRNA: 3'- cuaCUCGUCGUGUCGGGCa-UGGgUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 4414 | 0.7 | 0.292459 |
Target: 5'- -uUGGGaCAGCACGGgCCGUcCCgCAGUg -3' miRNA: 3'- cuACUC-GUCGUGUCgGGCAuGG-GUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 4490 | 0.73 | 0.185955 |
Target: 5'- --cGGGCAGCACugcgggacGGCCCGUGcuguCCCAaGCu -3' miRNA: 3'- cuaCUCGUCGUG--------UCGGGCAU----GGGU-CG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 5057 | 0.66 | 0.546052 |
Target: 5'- --aGGGCgAGUAaGGCCCGcacguaauagGCCCGGCc -3' miRNA: 3'- cuaCUCG-UCGUgUCGGGCa---------UGGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 5153 | 0.66 | 0.513522 |
Target: 5'- --cGAGCAcaucaACGGCaCCGUGCgUAGCg -3' miRNA: 3'- cuaCUCGUcg---UGUCG-GGCAUGgGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 5750 | 0.68 | 0.383842 |
Target: 5'- --cGGGUAGCGgcCAGCuuGUGCCaGGCc -3' miRNA: 3'- cuaCUCGUCGU--GUCGggCAUGGgUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 6574 | 0.69 | 0.348523 |
Target: 5'- aGAUGAGCAagACgAGCCUGUAUCC-GCu -3' miRNA: 3'- -CUACUCGUcgUG-UCGGGCAUGGGuCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 7019 | 0.69 | 0.340063 |
Target: 5'- ---cAGcCAGCucgGCGGCCCGUACCaguuCAGCg -3' miRNA: 3'- cuacUC-GUCG---UGUCGGGCAUGG----GUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 7241 | 0.69 | 0.365889 |
Target: 5'- uGUGAGCAGCAC-GCCCaggGCCaccagacugaaGGCg -3' miRNA: 3'- cUACUCGUCGUGuCGGGca-UGGg----------UCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 10390 | 0.67 | 0.455117 |
Target: 5'- cGAUGAGCGccGCGCcauGGUCCGcagccucauggaagaUugCCGGCg -3' miRNA: 3'- -CUACUCGU--CGUG---UCGGGC---------------AugGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 11249 | 0.72 | 0.218985 |
Target: 5'- -cUGGcGCAGCAU-GCCauccaGUACCCGGCg -3' miRNA: 3'- cuACU-CGUCGUGuCGGg----CAUGGGUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 12168 | 0.7 | 0.292459 |
Target: 5'- gGGUGAGUGGCACuGGCCCaccaucACCgAGCu -3' miRNA: 3'- -CUACUCGUCGUG-UCGGGca----UGGgUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 13591 | 0.66 | 0.524282 |
Target: 5'- cAUGAuGUcGCGCAGCCCuuguugACCuCGGCg -3' miRNA: 3'- cUACU-CGuCGUGUCGGGca----UGG-GUCG- -5' |
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22232 | 3' | -56.7 | NC_005045.1 | + | 13834 | 0.67 | 0.461208 |
Target: 5'- ---cGGCAGCGCGGCagcacugGUGgCCAGCa -3' miRNA: 3'- cuacUCGUCGUGUCGgg-----CAUgGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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