miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22232 3' -56.7 NC_005045.1 + 40517 0.68 0.411845
Target:  5'- -cUGcGCGGCGCAGCCCuggcggcUGCCCucGCc -3'
miRNA:   3'- cuACuCGUCGUGUCGGGc------AUGGGu-CG- -5'
22232 3' -56.7 NC_005045.1 + 42215 0.68 0.402371
Target:  5'- cGGUGGcGUGGCugcccauCGGCUCaUACCCAGCg -3'
miRNA:   3'- -CUACU-CGUCGu------GUCGGGcAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 152 0.68 0.402371
Target:  5'- cGGUGGcGUGGCugcccauCGGCUCaUACCCAGCg -3'
miRNA:   3'- -CUACU-CGUCGu------GUCGGGcAUGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 25787 0.68 0.402371
Target:  5'- cGGUG-GCGGCGCAGCuuGaggACCUgAGUa -3'
miRNA:   3'- -CUACuCGUCGUGUCGggCa--UGGG-UCG- -5'
22232 3' -56.7 NC_005045.1 + 23033 0.68 0.401431
Target:  5'- gGcgGAGCAGCagcgucaGCAGgCCGcgcagGCCCAGg -3'
miRNA:   3'- -CuaCUCGUCG-------UGUCgGGCa----UGGGUCg -5'
22232 3' -56.7 NC_005045.1 + 5750 0.68 0.383842
Target:  5'- --cGGGUAGCGgcCAGCuuGUGCCaGGCc -3'
miRNA:   3'- cuaCUCGUCGU--GUCGggCAUGGgUCG- -5'
22232 3' -56.7 NC_005045.1 + 40430 0.69 0.374793
Target:  5'- uGUGGGC-GCACAGCUCaucACCCuGCu -3'
miRNA:   3'- cUACUCGuCGUGUCGGGca-UGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 7241 0.69 0.365889
Target:  5'- uGUGAGCAGCAC-GCCCaggGCCaccagacugaaGGCg -3'
miRNA:   3'- cUACUCGUCGUGuCGGGca-UGGg----------UCG- -5'
22232 3' -56.7 NC_005045.1 + 30280 0.69 0.365889
Target:  5'- aGAUGGGCAuuGCccCGGCCCagGCCCuGCg -3'
miRNA:   3'- -CUACUCGU--CGu-GUCGGGcaUGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 6574 0.69 0.348523
Target:  5'- aGAUGAGCAagACgAGCCUGUAUCC-GCu -3'
miRNA:   3'- -CUACUCGUcgUG-UCGGGCAUGGGuCG- -5'
22232 3' -56.7 NC_005045.1 + 7019 0.69 0.340063
Target:  5'- ---cAGcCAGCucgGCGGCCCGUACCaguuCAGCg -3'
miRNA:   3'- cuacUC-GUCG---UGUCGGGCAUGG----GUCG- -5'
22232 3' -56.7 NC_005045.1 + 18347 0.7 0.323593
Target:  5'- uGAUGAGCAuCgACAGCCCa-GCCCgcAGCg -3'
miRNA:   3'- -CUACUCGUcG-UGUCGGGcaUGGG--UCG- -5'
22232 3' -56.7 NC_005045.1 + 4414 0.7 0.292459
Target:  5'- -uUGGGaCAGCACGGgCCGUcCCgCAGUg -3'
miRNA:   3'- cuACUC-GUCGUGUCgGGCAuGG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 12168 0.7 0.292459
Target:  5'- gGGUGAGUGGCACuGGCCCaccaucACCgAGCu -3'
miRNA:   3'- -CUACUCGUCGUG-UCGGGca----UGGgUCG- -5'
22232 3' -56.7 NC_005045.1 + 38218 0.71 0.285051
Target:  5'- -cUGAGCGGCugGGCCUGcUACaUgAGCu -3'
miRNA:   3'- cuACUCGUCGugUCGGGC-AUG-GgUCG- -5'
22232 3' -56.7 NC_005045.1 + 34412 0.71 0.285051
Target:  5'- cGUGAGCaccAGCuCGGcCCCGUugCaCAGCg -3'
miRNA:   3'- cUACUCG---UCGuGUC-GGGCAugG-GUCG- -5'
22232 3' -56.7 NC_005045.1 + 2281 0.71 0.277791
Target:  5'- aGGUaAGCAGCgGCGGCCagGUAgCCGGCa -3'
miRNA:   3'- -CUAcUCGUCG-UGUCGGg-CAUgGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 34829 0.71 0.269976
Target:  5'- --cGGGCGGCgcagggggaugaaGCGGCCCuucgaGUGCuCCAGCa -3'
miRNA:   3'- cuaCUCGUCG-------------UGUCGGG-----CAUG-GGUCG- -5'
22232 3' -56.7 NC_005045.1 + 42226 0.71 0.250224
Target:  5'- aAUGGGCAGCGagggcagggaAGCCCucgccACCCGGCg -3'
miRNA:   3'- cUACUCGUCGUg---------UCGGGca---UGGGUCG- -5'
22232 3' -56.7 NC_005045.1 + 163 0.71 0.250224
Target:  5'- aAUGGGCAGCGagggcagggaAGCCCucgccACCCGGCg -3'
miRNA:   3'- cUACUCGUCGUg---------UCGGGca---UGGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.