miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22232 5' -59.2 NC_005045.1 + 18648 0.66 0.436646
Target:  5'- aGGCCAGGGAguuccuccaGGACCccucGGC-GGCa -3'
miRNA:   3'- cUCGGUCCCU---------UCUGGcau-CCGaCCGc -5'
22232 5' -59.2 NC_005045.1 + 24028 0.66 0.408188
Target:  5'- -uGCCAGGGcAGGuGCCGcagcacccagGGGUUGGCc -3'
miRNA:   3'- cuCGGUCCC-UUC-UGGCa---------UCCGACCGc -5'
22232 5' -59.2 NC_005045.1 + 33829 0.66 0.389872
Target:  5'- uGGCuCAGauGGAugAGGCCGccccUGGGCUGGCc -3'
miRNA:   3'- cUCG-GUC--CCU--UCUGGC----AUCCGACCGc -5'
22232 5' -59.2 NC_005045.1 + 7284 0.67 0.380918
Target:  5'- -uGCCAGGucaugcGGGcGCCGUAGGCgGGCc -3'
miRNA:   3'- cuCGGUCCc-----UUC-UGGCAUCCGaCCGc -5'
22232 5' -59.2 NC_005045.1 + 865 0.67 0.337434
Target:  5'- -cGCguGGGAAGGCCccAGGgagcgccCUGGCGa -3'
miRNA:   3'- cuCGguCCCUUCUGGcaUCC-------GACCGC- -5'
22232 5' -59.2 NC_005045.1 + 14797 0.68 0.322184
Target:  5'- cGAGCCGGGGAAGuUgGU-GGCcGaGCGg -3'
miRNA:   3'- -CUCGGUCCCUUCuGgCAuCCGaC-CGC- -5'
22232 5' -59.2 NC_005045.1 + 28525 0.69 0.263668
Target:  5'- uAGCCGGcGGAAGcGCCG-AGGCUcaGGCc -3'
miRNA:   3'- cUCGGUC-CCUUC-UGGCaUCCGA--CCGc -5'
22232 5' -59.2 NC_005045.1 + 20530 0.71 0.203002
Target:  5'- aGGUCAGGGAAGACCGUAGag-GGa- -3'
miRNA:   3'- cUCGGUCCCUUCUGGCAUCcgaCCgc -5'
22232 5' -59.2 NC_005045.1 + 18000 0.72 0.172714
Target:  5'- cGGCCAGGGu-GACCGccuguuccAGGgUGGCGg -3'
miRNA:   3'- cUCGGUCCCuuCUGGCa-------UCCgACCGC- -5'
22232 5' -59.2 NC_005045.1 + 23482 0.72 0.165347
Target:  5'- -cGCCGgccuucacucccaacGGGGAGAUCGUAGGCacccUGGCa -3'
miRNA:   3'- cuCGGU---------------CCCUUCUGGCAUCCG----ACCGc -5'
22232 5' -59.2 NC_005045.1 + 42337 1.07 0.000343
Target:  5'- aGAGCCAGGGAAGACCGUAGGCUGGCGc -3'
miRNA:   3'- -CUCGGUCCCUUCUGGCAUCCGACCGC- -5'
22232 5' -59.2 NC_005045.1 + 274 1.07 0.000343
Target:  5'- aGAGCCAGGGAAGACCGUAGGCUGGCGc -3'
miRNA:   3'- -CUCGGUCCCUUCUGGCAUCCGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.