miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22233 3' -50.1 NC_005045.1 + 861 1.07 0.002893
Target:  5'- uAUCGUUCCCAGGUAACGCAAAUCCACc -3'
miRNA:   3'- -UAGCAAGGGUCCAUUGCGUUUAGGUG- -5'
22233 3' -50.1 NC_005045.1 + 20270 0.7 0.6958
Target:  5'- gGUCagUCCCAGGUGGCuGCu-GUCCAg -3'
miRNA:   3'- -UAGcaAGGGUCCAUUG-CGuuUAGGUg -5'
22233 3' -50.1 NC_005045.1 + 22520 0.69 0.752572
Target:  5'- -aCGUg-CCAGGUGGCGCGGaagccGUCCGu -3'
miRNA:   3'- uaGCAagGGUCCAUUGCGUU-----UAGGUg -5'
22233 3' -50.1 NC_005045.1 + 26582 0.68 0.805836
Target:  5'- cAUCGcaUUCCguGGcGACGCcgauAUCCACg -3'
miRNA:   3'- -UAGC--AAGGguCCaUUGCGuu--UAGGUG- -5'
22233 3' -50.1 NC_005045.1 + 5549 0.67 0.835404
Target:  5'- -cCGUgcUCCCAGGUGACccCGGAgaugcgCCGCg -3'
miRNA:   3'- uaGCA--AGGGUCCAUUGc-GUUUa-----GGUG- -5'
22233 3' -50.1 NC_005045.1 + 18784 0.67 0.835404
Target:  5'- aGUCGUUCCaGGGUcGCgGCGGcgCCAg -3'
miRNA:   3'- -UAGCAAGGgUCCAuUG-CGUUuaGGUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.