Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22233 | 5' | -61.6 | NC_005045.1 | + | 37387 | 0.69 | 0.167643 |
Target: 5'- uGAGCGccGCCGCCgGGaCCGGGAUUAuCCAg -3' miRNA: 3'- -CUCGU--CGGUGGgUC-GGUCCUGGU-GGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 29992 | 0.66 | 0.312477 |
Target: 5'- aGGCGGCCaacgGCUCaAGCCugacGGAUCGCCu -3' miRNA: 3'- cUCGUCGG----UGGG-UCGGu---CCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 23253 | 0.66 | 0.28725 |
Target: 5'- cAGCAGCaggcuccgguccaGCCCGGUCagguGGGugCGCCGc -3' miRNA: 3'- cUCGUCGg------------UGGGUCGG----UCCugGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 34442 | 0.66 | 0.282968 |
Target: 5'- cGGGcCAGCgGCCUGaCCAGcGCCACCAu -3' miRNA: 3'- -CUC-GUCGgUGGGUcGGUCcUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 27666 | 0.66 | 0.275944 |
Target: 5'- uGAaCAGCCugCCAGCCcgugAGGGUCugCAa -3' miRNA: 3'- -CUcGUCGGugGGUCGG----UCCUGGugGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 18836 | 0.67 | 0.26906 |
Target: 5'- cAGCuccGCCACCUgGGCCAGGACaagauGCCc -3' miRNA: 3'- cUCGu--CGGUGGG-UCGGUCCUGg----UGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 14129 | 0.67 | 0.26906 |
Target: 5'- cGGCGGUCGcaucuuCCCGGCgGGcACCGCCAu -3' miRNA: 3'- cUCGUCGGU------GGGUCGgUCcUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 41508 | 0.67 | 0.255709 |
Target: 5'- cAGCAGCCACUgcccugggCGGCgAGGGcggcgcuaccCCACCGg -3' miRNA: 3'- cUCGUCGGUGG--------GUCGgUCCU----------GGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 36331 | 0.67 | 0.24924 |
Target: 5'- -cGCAgauucGCCgGCCCaAGCCGGugcuGACCACCAu -3' miRNA: 3'- cuCGU-----CGG-UGGG-UCGGUC----CUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 20207 | 0.68 | 0.230641 |
Target: 5'- cAGCAGCCACCUGGgacuGACCGCCc -3' miRNA: 3'- cUCGUCGGUGGGUCggucCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 1176 | 0.69 | 0.191776 |
Target: 5'- ---uGGCCACUCAGCaaaAGGGCCuauGCCAg -3' miRNA: 3'- cucgUCGGUGGGUCGg--UCCUGG---UGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 38939 | 0.69 | 0.181776 |
Target: 5'- -uGCAucgggaucaccGCCGCCCu-CCAGGGCUACCGg -3' miRNA: 3'- cuCGU-----------CGGUGGGucGGUCCUGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 26933 | 0.73 | 0.088425 |
Target: 5'- cGGUAGCCucauCCCAGCgCAGGGCCAgUg -3' miRNA: 3'- cUCGUCGGu---GGGUCG-GUCCUGGUgGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 17900 | 0.74 | 0.081192 |
Target: 5'- gGAcCAGCCuCCuCGGUCAGGGCCACCu -3' miRNA: 3'- -CUcGUCGGuGG-GUCGGUCCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 39367 | 0.75 | 0.068387 |
Target: 5'- cGGGuCAGCCGCCCAGCCAcGGguGCCGUCGa -3' miRNA: 3'- -CUC-GUCGGUGGGUCGGU-CC--UGGUGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 18768 | 0.77 | 0.046982 |
Target: 5'- cGGCGGCgccagcaucaCGCuCCGGCCAGGGCCGCCc -3' miRNA: 3'- cUCGUCG----------GUG-GGUCGGUCCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 552 | 0.77 | 0.041824 |
Target: 5'- gGAGUGGCCagGCaaAGCCAGGACCACCc -3' miRNA: 3'- -CUCGUCGG--UGggUCGGUCCUGGUGGu -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 308 | 0.78 | 0.040624 |
Target: 5'- uGAGCAGCacaGCCCguacccagcAGCCAGGGCCagaGCCAg -3' miRNA: 3'- -CUCGUCGg--UGGG---------UCGGUCCUGG---UGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 42371 | 0.78 | 0.040624 |
Target: 5'- uGAGCAGCacaGCCCguacccagcAGCCAGGGCCagaGCCAg -3' miRNA: 3'- -CUCGUCGg--UGGG---------UCGGUCCUGG---UGGU- -5' |
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22233 | 5' | -61.6 | NC_005045.1 | + | 32182 | 0.66 | 0.312477 |
Target: 5'- cAGCAGCCAUgCCAGCac-GACCgaGCCGc -3' miRNA: 3'- cUCGUCGGUG-GGUCGgucCUGG--UGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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