miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22234 5' -57 NC_005045.1 + 590 0.68 0.412283
Target:  5'- uCCCUGGGuGCUggucuaccUCCCugGCGcUGUGc- -3'
miRNA:   3'- -GGGACCC-CGGa-------AGGGugCGC-AUAUcu -5'
22234 5' -57 NC_005045.1 + 30052 0.68 0.421718
Target:  5'- gCCUGGGGaCCUUCCCcaagaccuacgGCGaGUccGUGGGc -3'
miRNA:   3'- gGGACCCC-GGAAGGG-----------UGCgCA--UAUCU- -5'
22234 5' -57 NC_005045.1 + 32627 0.67 0.470756
Target:  5'- gCCUGGGGCagcguaCCGCGUuccGUGUGGu -3'
miRNA:   3'- gGGACCCCGgaag--GGUGCG---CAUAUCu -5'
22234 5' -57 NC_005045.1 + 40121 0.67 0.474805
Target:  5'- cCCUUGaGGGCCUUguccgcgagcuagcaCCCACGCucGUGaAGGa -3'
miRNA:   3'- -GGGAC-CCCGGAA---------------GGGUGCG--CAUaUCU- -5'
22234 5' -57 NC_005045.1 + 18686 0.66 0.554635
Target:  5'- aCCUGGGGCgg-CCCugGCc---GGAg -3'
miRNA:   3'- gGGACCCCGgaaGGGugCGcauaUCU- -5'
22234 5' -57 NC_005045.1 + 926 1.1 0.000409
Target:  5'- uCCCUGGGGCCUUCCCACGCGUAUAGAg -3'
miRNA:   3'- -GGGACCCCGGAAGGGUGCGCAUAUCU- -5'
22234 5' -57 NC_005045.1 + 8104 0.72 0.234047
Target:  5'- uCCUUGGGGUCgaacccgUCCgGCGUGUGUAu- -3'
miRNA:   3'- -GGGACCCCGGa------AGGgUGCGCAUAUcu -5'
22234 5' -57 NC_005045.1 + 30024 0.68 0.450782
Target:  5'- cCCaCUGcuccaGGGCCUcagugacguucgUCCCcaGCGUGUGUAGGg -3'
miRNA:   3'- -GG-GAC-----CCCGGA------------AGGG--UGCGCAUAUCU- -5'
22234 5' -57 NC_005045.1 + 41534 0.68 0.460712
Target:  5'- gCCUUGGccuugaaucGGCCUcgUCCAUGuCGUGUAGGg -3'
miRNA:   3'- -GGGACC---------CCGGAa-GGGUGC-GCAUAUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.