Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22235 | 5' | -54.5 | NC_005045.1 | + | 16501 | 0.66 | 0.662276 |
Target: 5'- -uGGGCCUCAAGaaGGGCGccgagcaccuGACCga-GCa -3' miRNA: 3'- uuCCCGGAGUUC--CCUGU----------UUGGaacCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 37113 | 0.66 | 0.650834 |
Target: 5'- --cGGCC---AGGGACuGGCCUUGGa -3' miRNA: 3'- uucCCGGaguUCCCUGuUUGGAACCg -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 10527 | 0.66 | 0.650834 |
Target: 5'- -uGGGCUUCGAGGGGuCGAuggagaaagacccgaGCCUgaccuaccgcaacGGCa -3' miRNA: 3'- uuCCCGGAGUUCCCU-GUU---------------UGGAa------------CCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 38901 | 0.66 | 0.639374 |
Target: 5'- -cGGGCCUCGGGGcGCAGguacGCCagcaGGUc -3' miRNA: 3'- uuCCCGGAGUUCCcUGUU----UGGaa--CCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 564 | 0.66 | 0.627908 |
Target: 5'- -cGuGGCCUaGAGGGAguGGCCa-GGCa -3' miRNA: 3'- uuC-CCGGAgUUCCCUguUUGGaaCCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 32622 | 0.66 | 0.616445 |
Target: 5'- gGAGGGCCU---GGGGCAGcguACCgcguuccgugUGGUg -3' miRNA: 3'- -UUCCCGGAguuCCCUGUU---UGGa---------ACCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 15018 | 0.67 | 0.578779 |
Target: 5'- -uGGGCCUCGGcaguaccuaccaccGGGGCGGcgacauucgccACCUgcGGCa -3' miRNA: 3'- uuCCCGGAGUU--------------CCCUGUU-----------UGGAa-CCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 39286 | 0.67 | 0.559556 |
Target: 5'- cAAGGGCCUCGAcGG-CAc-CCgUGGCu -3' miRNA: 3'- -UUCCCGGAGUUcCCuGUuuGGaACCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 2140 | 0.67 | 0.559556 |
Target: 5'- -cGGcguGCCUUGucGcGGCGAGCCUUGGCg -3' miRNA: 3'- uuCC---CGGAGUucC-CUGUUUGGAACCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 42146 | 0.68 | 0.532739 |
Target: 5'- cGAGGGCCUaCGGGGGAagggug--GGCg -3' miRNA: 3'- -UUCCCGGA-GUUCCCUguuuggaaCCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 83 | 0.68 | 0.532739 |
Target: 5'- cGAGGGCCUaCGGGGGAagggug--GGCg -3' miRNA: 3'- -UUCCCGGA-GUUCCCUguuuggaaCCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 12472 | 0.68 | 0.526104 |
Target: 5'- cAGGGCUUCGAGGcGGcCAAGCUguugaugcgccUGGCc -3' miRNA: 3'- uUCCCGGAGUUCC-CU-GUUUGGa----------ACCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 6312 | 0.68 | 0.493433 |
Target: 5'- uGGGGCCUacuccGGGGuCAAAuCCgagGGCg -3' miRNA: 3'- uUCCCGGAgu---UCCCuGUUU-GGaa-CCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 25446 | 0.68 | 0.489146 |
Target: 5'- -cGGGCCgcaucaaccugccCAAGGG-C--ACCUUGGCa -3' miRNA: 3'- uuCCCGGa------------GUUCCCuGuuUGGAACCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 1707 | 0.69 | 0.46589 |
Target: 5'- cGAGGGgaUUCAAGaGACAGACCUagugaggauugccgaUGGCa -3' miRNA: 3'- -UUCCCg-GAGUUCcCUGUUUGGA---------------ACCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 36987 | 0.69 | 0.451393 |
Target: 5'- cAGGcGCCaCGAGGGACAcguuagcgggGACCggGGUa -3' miRNA: 3'- uUCC-CGGaGUUCCCUGU----------UUGGaaCCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 31137 | 0.7 | 0.41139 |
Target: 5'- -uGGGCCU---GGGGCAuuACCUgGGCa -3' miRNA: 3'- uuCCCGGAguuCCCUGUu-UGGAaCCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 8613 | 0.71 | 0.37366 |
Target: 5'- gAAGGGCCUCcacgccGGGGccuCGGugCUggUGGCa -3' miRNA: 3'- -UUCCCGGAGu-----UCCCu--GUUugGA--ACCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 26821 | 0.71 | 0.355696 |
Target: 5'- cGGGGCCUU---GGugGAGCCggUGGCc -3' miRNA: 3'- uUCCCGGAGuucCCugUUUGGa-ACCG- -5' |
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22235 | 5' | -54.5 | NC_005045.1 | + | 32663 | 0.81 | 0.080793 |
Target: 5'- cAGGGUCUUGAGGGuguCAGccACCUUGGCg -3' miRNA: 3'- uUCCCGGAGUUCCCu--GUU--UGGAACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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