miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22235 5' -54.5 NC_005045.1 + 16501 0.66 0.662276
Target:  5'- -uGGGCCUCAAGaaGGGCGccgagcaccuGACCga-GCa -3'
miRNA:   3'- uuCCCGGAGUUC--CCUGU----------UUGGaacCG- -5'
22235 5' -54.5 NC_005045.1 + 37113 0.66 0.650834
Target:  5'- --cGGCC---AGGGACuGGCCUUGGa -3'
miRNA:   3'- uucCCGGaguUCCCUGuUUGGAACCg -5'
22235 5' -54.5 NC_005045.1 + 10527 0.66 0.650834
Target:  5'- -uGGGCUUCGAGGGGuCGAuggagaaagacccgaGCCUgaccuaccgcaacGGCa -3'
miRNA:   3'- uuCCCGGAGUUCCCU-GUU---------------UGGAa------------CCG- -5'
22235 5' -54.5 NC_005045.1 + 38901 0.66 0.639374
Target:  5'- -cGGGCCUCGGGGcGCAGguacGCCagcaGGUc -3'
miRNA:   3'- uuCCCGGAGUUCCcUGUU----UGGaa--CCG- -5'
22235 5' -54.5 NC_005045.1 + 564 0.66 0.627908
Target:  5'- -cGuGGCCUaGAGGGAguGGCCa-GGCa -3'
miRNA:   3'- uuC-CCGGAgUUCCCUguUUGGaaCCG- -5'
22235 5' -54.5 NC_005045.1 + 32622 0.66 0.616445
Target:  5'- gGAGGGCCU---GGGGCAGcguACCgcguuccgugUGGUg -3'
miRNA:   3'- -UUCCCGGAguuCCCUGUU---UGGa---------ACCG- -5'
22235 5' -54.5 NC_005045.1 + 15018 0.67 0.578779
Target:  5'- -uGGGCCUCGGcaguaccuaccaccGGGGCGGcgacauucgccACCUgcGGCa -3'
miRNA:   3'- uuCCCGGAGUU--------------CCCUGUU-----------UGGAa-CCG- -5'
22235 5' -54.5 NC_005045.1 + 2140 0.67 0.559556
Target:  5'- -cGGcguGCCUUGucGcGGCGAGCCUUGGCg -3'
miRNA:   3'- uuCC---CGGAGUucC-CUGUUUGGAACCG- -5'
22235 5' -54.5 NC_005045.1 + 39286 0.67 0.559556
Target:  5'- cAAGGGCCUCGAcGG-CAc-CCgUGGCu -3'
miRNA:   3'- -UUCCCGGAGUUcCCuGUuuGGaACCG- -5'
22235 5' -54.5 NC_005045.1 + 42146 0.68 0.532739
Target:  5'- cGAGGGCCUaCGGGGGAagggug--GGCg -3'
miRNA:   3'- -UUCCCGGA-GUUCCCUguuuggaaCCG- -5'
22235 5' -54.5 NC_005045.1 + 83 0.68 0.532739
Target:  5'- cGAGGGCCUaCGGGGGAagggug--GGCg -3'
miRNA:   3'- -UUCCCGGA-GUUCCCUguuuggaaCCG- -5'
22235 5' -54.5 NC_005045.1 + 12472 0.68 0.526104
Target:  5'- cAGGGCUUCGAGGcGGcCAAGCUguugaugcgccUGGCc -3'
miRNA:   3'- uUCCCGGAGUUCC-CU-GUUUGGa----------ACCG- -5'
22235 5' -54.5 NC_005045.1 + 6312 0.68 0.493433
Target:  5'- uGGGGCCUacuccGGGGuCAAAuCCgagGGCg -3'
miRNA:   3'- uUCCCGGAgu---UCCCuGUUU-GGaa-CCG- -5'
22235 5' -54.5 NC_005045.1 + 25446 0.68 0.489146
Target:  5'- -cGGGCCgcaucaaccugccCAAGGG-C--ACCUUGGCa -3'
miRNA:   3'- uuCCCGGa------------GUUCCCuGuuUGGAACCG- -5'
22235 5' -54.5 NC_005045.1 + 1707 0.69 0.46589
Target:  5'- cGAGGGgaUUCAAGaGACAGACCUagugaggauugccgaUGGCa -3'
miRNA:   3'- -UUCCCg-GAGUUCcCUGUUUGGA---------------ACCG- -5'
22235 5' -54.5 NC_005045.1 + 36987 0.69 0.451393
Target:  5'- cAGGcGCCaCGAGGGACAcguuagcgggGACCggGGUa -3'
miRNA:   3'- uUCC-CGGaGUUCCCUGU----------UUGGaaCCG- -5'
22235 5' -54.5 NC_005045.1 + 31137 0.7 0.41139
Target:  5'- -uGGGCCU---GGGGCAuuACCUgGGCa -3'
miRNA:   3'- uuCCCGGAguuCCCUGUu-UGGAaCCG- -5'
22235 5' -54.5 NC_005045.1 + 8613 0.71 0.37366
Target:  5'- gAAGGGCCUCcacgccGGGGccuCGGugCUggUGGCa -3'
miRNA:   3'- -UUCCCGGAGu-----UCCCu--GUUugGA--ACCG- -5'
22235 5' -54.5 NC_005045.1 + 26821 0.71 0.355696
Target:  5'- cGGGGCCUU---GGugGAGCCggUGGCc -3'
miRNA:   3'- uUCCCGGAGuucCCugUUUGGa-ACCG- -5'
22235 5' -54.5 NC_005045.1 + 32663 0.81 0.080793
Target:  5'- cAGGGUCUUGAGGGuguCAGccACCUUGGCg -3'
miRNA:   3'- uUCCCGGAGUUCCCu--GUU--UGGAACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.