miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22236 3' -57.8 NC_005045.1 + 31646 0.72 0.189627
Target:  5'- gACGcCCUGACGGGUGGCGaGaUCGGAg -3'
miRNA:   3'- aUGC-GGACUGUCCACUGUaCgGGCCU- -5'
22236 3' -57.8 NC_005045.1 + 41143 0.67 0.387994
Target:  5'- aGCGCCaGG-AGGUGGacCGUGCCCuGGAc -3'
miRNA:   3'- aUGCGGaCUgUCCACU--GUACGGG-CCU- -5'
22236 3' -57.8 NC_005045.1 + 31312 0.67 0.435212
Target:  5'- --gGCCUuccaGAUGGGcgaagGGCGUGCCCGGc -3'
miRNA:   3'- augCGGA----CUGUCCa----CUGUACGGGCCu -5'
22236 3' -57.8 NC_005045.1 + 3122 1.07 0.000522
Target:  5'- gUACGCCUGACAGGUGACAUGCCCGGAc -3'
miRNA:   3'- -AUGCGGACUGUCCACUGUACGGGCCU- -5'
22236 3' -57.8 NC_005045.1 + 39623 0.68 0.352725
Target:  5'- aGCGCC-GGCAGGU-ACA-GCUCGGGc -3'
miRNA:   3'- aUGCGGaCUGUCCAcUGUaCGGGCCU- -5'
22236 3' -57.8 NC_005045.1 + 39249 0.66 0.465087
Target:  5'- cGCGCCUGcucgucCAGGgucggGaACcgGCCCGGc -3'
miRNA:   3'- aUGCGGACu-----GUCCa----C-UGuaCGGGCCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.