miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2224 5' -58.1 NC_001405.1 + 30355 0.66 0.467765
Target:  5'- -gCCUCGCCCCCcuucucccaCCCCCa -3'
miRNA:   3'- cgGGGGUGGGGGaaaauaucgGGGGG- -5'
2224 5' -58.1 NC_001405.1 + 10025 0.66 0.464725
Target:  5'- cGCCCUCuucCUCCCaugcgUGUgaccccgaAGCCCCUCa -3'
miRNA:   3'- -CGGGGGu--GGGGGaaa--AUA--------UCGGGGGG- -5'
2224 5' -58.1 NC_001405.1 + 17625 0.66 0.464725
Target:  5'- gGgUCCUGCCUCCUUcgcgAGCCaCCCUg -3'
miRNA:   3'- -CgGGGGUGGGGGAAaauaUCGG-GGGG- -5'
2224 5' -58.1 NC_001405.1 + 5914 0.66 0.454669
Target:  5'- aCCgCUACCCCUcccacuUAGCCUCCUu -3'
miRNA:   3'- cGGgGGUGGGGGaaaau-AUCGGGGGG- -5'
2224 5' -58.1 NC_001405.1 + 24163 0.66 0.454669
Target:  5'- cGCCUaCCACcuuCCCCgucga-GGCaCCCCCg -3'
miRNA:   3'- -CGGG-GGUG---GGGGaaaauaUCG-GGGGG- -5'
2224 5' -58.1 NC_001405.1 + 9630 0.67 0.388716
Target:  5'- aGCgCCgUAUCCCUgccgcacggcAGCCCCCCg -3'
miRNA:   3'- -CG-GGgGUGGGGGaaaaua----UCGGGGGG- -5'
2224 5' -58.1 NC_001405.1 + 35804 0.67 0.378795
Target:  5'- cGUCaCCCGCCCCgUUcccacGCCCCgCg -3'
miRNA:   3'- -CGG-GGGUGGGGgAAaauauCGGGGgG- -5'
2224 5' -58.1 NC_001405.1 + 134 0.67 0.378795
Target:  5'- cGUCaCCCGCCCCgUUcccacGCCCCgCg -3'
miRNA:   3'- -CGG-GGGUGGGGgAAaauauCGGGGgG- -5'
2224 5' -58.1 NC_001405.1 + 17430 0.69 0.281961
Target:  5'- cGCgCCUACCCCCggcuaucGUGGCUacaccuaccgCCCCa -3'
miRNA:   3'- -CGgGGGUGGGGGaaaa---UAUCGG----------GGGG- -5'
2224 5' -58.1 NC_001405.1 + 23987 0.7 0.246514
Target:  5'- cGCCgCCGCCUCCccgcgc-GCCCCCa -3'
miRNA:   3'- -CGGgGGUGGGGGaaaauauCGGGGGg -5'
2224 5' -58.1 NC_001405.1 + 18305 0.71 0.217148
Target:  5'- aUCCCCGCCCUCccgUAgaggAGCCUCCa -3'
miRNA:   3'- cGGGGGUGGGGGaaaAUa---UCGGGGGg -5'
2224 5' -58.1 NC_001405.1 + 24108 0.72 0.189793
Target:  5'- aGCCUaaCCGCCCCCUUUg--AGUUCgCCa -3'
miRNA:   3'- -CGGG--GGUGGGGGAAAauaUCGGGgGG- -5'
2224 5' -58.1 NC_001405.1 + 6735 0.73 0.157042
Target:  5'- cGCUcaCCCACCCCaugccauggGGUCCCCCa -3'
miRNA:   3'- -CGG--GGGUGGGGgaaaaua--UCGGGGGG- -5'
2224 5' -58.1 NC_001405.1 + 12978 0.75 0.118283
Target:  5'- aGCCCgCACCCCCcac---AGCCCCUg -3'
miRNA:   3'- -CGGGgGUGGGGGaaaauaUCGGGGGg -5'
2224 5' -58.1 NC_001405.1 + 10416 0.79 0.060871
Target:  5'- aGCCCCgGCCaCCCUacgcUGGCCCCUCu -3'
miRNA:   3'- -CGGGGgUGG-GGGAaaauAUCGGGGGG- -5'
2224 5' -58.1 NC_001405.1 + 2372 0.8 0.048114
Target:  5'- aGCCCCCcgcucccucuuuACCCCCUU---UAGCCCCUg -3'
miRNA:   3'- -CGGGGG------------UGGGGGAAaauAUCGGGGGg -5'
2224 5' -58.1 NC_001405.1 + 8673 0.83 0.030663
Target:  5'- uGCCCCUGCCCCCUcucccggcggGUcccgAGCCCCCCc -3'
miRNA:   3'- -CGGGGGUGGGGGAaaa-------UA----UCGGGGGG- -5'
2224 5' -58.1 NC_001405.1 + 6056 1.13 0.000144
Target:  5'- cGCCCCCACCCCCUUUUAUAGCCCCCCu -3'
miRNA:   3'- -CGGGGGUGGGGGAAAAUAUCGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.