miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22241 3' -55.9 NC_005045.1 + 3270 0.67 0.512675
Target:  5'- -aCCCAGGUaGCgguCGCUGuaguUCACCAg -3'
miRNA:   3'- caGGGUUCGaCGau-GCGGCu---AGUGGU- -5'
22241 3' -55.9 NC_005045.1 + 4463 1.08 0.000597
Target:  5'- uGUCCCAAGCUGCUACGCCGAUCACCAg -3'
miRNA:   3'- -CAGGGUUCGACGAUGCGGCUAGUGGU- -5'
22241 3' -55.9 NC_005045.1 + 4682 0.67 0.501967
Target:  5'- --aCCAccGCUGCUACcCCGggCGCCAa -3'
miRNA:   3'- cagGGUu-CGACGAUGcGGCuaGUGGU- -5'
22241 3' -55.9 NC_005045.1 + 5026 0.66 0.545328
Target:  5'- cGUCC--AGCaGCUugGCCGGUgCGCUg -3'
miRNA:   3'- -CAGGguUCGaCGAugCGGCUA-GUGGu -5'
22241 3' -55.9 NC_005045.1 + 6025 0.66 0.567466
Target:  5'- gGUCCgCAAGCUuccguacccgGCUGCGCagCGGUCcguCCAu -3'
miRNA:   3'- -CAGG-GUUCGA----------CGAUGCG--GCUAGu--GGU- -5'
22241 3' -55.9 NC_005045.1 + 7727 0.67 0.534362
Target:  5'- aUCCCAAGUggguggGCUACGgguauccugccCCGgAUUACCAu -3'
miRNA:   3'- cAGGGUUCGa-----CGAUGC-----------GGC-UAGUGGU- -5'
22241 3' -55.9 NC_005045.1 + 15859 0.68 0.43009
Target:  5'- --gCCGAGgUGCUguggauGCGCCGAaCGCCGa -3'
miRNA:   3'- cagGGUUCgACGA------UGCGGCUaGUGGU- -5'
22241 3' -55.9 NC_005045.1 + 18783 0.66 0.601065
Target:  5'- --aCCAuguGCUGgUACGCCGcaccaagCACCAg -3'
miRNA:   3'- cagGGUu--CGACgAUGCGGCua-----GUGGU- -5'
22241 3' -55.9 NC_005045.1 + 19430 0.68 0.460184
Target:  5'- -aCCCAGGCUGCccgguCGUCGAaguaCACCu -3'
miRNA:   3'- caGGGUUCGACGau---GCGGCUa---GUGGu -5'
22241 3' -55.9 NC_005045.1 + 23196 0.71 0.322261
Target:  5'- -cCCCcGGCUGCcGCGCCGAccccgaACCAu -3'
miRNA:   3'- caGGGuUCGACGaUGCGGCUag----UGGU- -5'
22241 3' -55.9 NC_005045.1 + 23311 0.66 0.578622
Target:  5'- -aCCgGAGcCUGCUGC-UgGAUCACCGg -3'
miRNA:   3'- caGGgUUC-GACGAUGcGgCUAGUGGU- -5'
22241 3' -55.9 NC_005045.1 + 25004 0.68 0.439994
Target:  5'- -gCCCAAGUg---GCGCCGGUCcagGCCAa -3'
miRNA:   3'- caGGGUUCGacgaUGCGGCUAG---UGGU- -5'
22241 3' -55.9 NC_005045.1 + 27817 0.73 0.2297
Target:  5'- gGUCCCAAuGCUGCUugGUCagcuccagcUCACCAg -3'
miRNA:   3'- -CAGGGUU-CGACGAugCGGcu-------AGUGGU- -5'
22241 3' -55.9 NC_005045.1 + 29372 0.68 0.439994
Target:  5'- -gCCUucuGCUGCUGCGCCag-CGCCu -3'
miRNA:   3'- caGGGuu-CGACGAUGCGGcuaGUGGu -5'
22241 3' -55.9 NC_005045.1 + 29530 0.66 0.553047
Target:  5'- cUUCCAGGCUgaGCUGCcgggacaguucgucGCCGGUgGCCu -3'
miRNA:   3'- cAGGGUUCGA--CGAUG--------------CGGCUAgUGGu -5'
22241 3' -55.9 NC_005045.1 + 30518 0.66 0.567466
Target:  5'- -gCUCAGGUcGCUuuCGCCGGUCAgCAu -3'
miRNA:   3'- caGGGUUCGaCGAu-GCGGCUAGUgGU- -5'
22241 3' -55.9 NC_005045.1 + 33611 0.71 0.306376
Target:  5'- gGUCacgcggGAGCUGCUGCGCCGGg-ACCGg -3'
miRNA:   3'- -CAGgg----UUCGACGAUGCGGCUagUGGU- -5'
22241 3' -55.9 NC_005045.1 + 36861 0.68 0.450027
Target:  5'- cGUCCCuAGCggagGCUGgacgaacauguuCGCCGG-CACCGg -3'
miRNA:   3'- -CAGGGuUCGa---CGAU------------GCGGCUaGUGGU- -5'
22241 3' -55.9 NC_005045.1 + 38063 0.67 0.491359
Target:  5'- -gCCCAGGC-GCUGCccucuggccGCCGAUCGuCUAg -3'
miRNA:   3'- caGGGUUCGaCGAUG---------CGGCUAGU-GGU- -5'
22241 3' -55.9 NC_005045.1 + 39559 0.7 0.364623
Target:  5'- -gCCCGAGCUGUaccugccgGCGCUGAUgGCUg -3'
miRNA:   3'- caGGGUUCGACGa-------UGCGGCUAgUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.