miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22241 5' -57.2 NC_005045.1 + 237 0.66 0.502852
Target:  5'- -cUGGCUgcuggguaCGGGCUGUGCUGCUCa-- -3'
miRNA:   3'- gaAUCGGa-------GCCCGACGUGAUGGGcua -5'
22241 5' -57.2 NC_005045.1 + 4427 1.06 0.000617
Target:  5'- gCUUAGCCUCGGGCUGCACUACCCGAUa -3'
miRNA:   3'- -GAAUCGGAGCCCGACGUGAUGGGCUA- -5'
22241 5' -57.2 NC_005045.1 + 18820 0.66 0.481812
Target:  5'- uCUgcGCCUUGGcGCUGUAgUAUCCGc- -3'
miRNA:   3'- -GAauCGGAGCC-CGACGUgAUGGGCua -5'
22241 5' -57.2 NC_005045.1 + 24045 0.68 0.383842
Target:  5'- --aAGCCgauauGGCUGCGCUGCgCGAg -3'
miRNA:   3'- gaaUCGGagc--CCGACGUGAUGgGCUa -5'
22241 5' -57.2 NC_005045.1 + 33024 0.68 0.357132
Target:  5'- -gUAGCCUgGGGcCUGaCGgaUACCCGAUu -3'
miRNA:   3'- gaAUCGGAgCCC-GAC-GUg-AUGGGCUA- -5'
22241 5' -57.2 NC_005045.1 + 37089 0.68 0.393036
Target:  5'- -gUAGUCUCuGaGCUGUACU-CCCGAUc -3'
miRNA:   3'- gaAUCGGAGcC-CGACGUGAuGGGCUA- -5'
22241 5' -57.2 NC_005045.1 + 42300 0.66 0.502852
Target:  5'- -cUGGCUgcuggguaCGGGCUGUGCUGCUCa-- -3'
miRNA:   3'- gaAUCGGa-------GCCCGACGUGAUGGGcua -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.