miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22242 3' -55.1 NC_005045.1 + 23776 0.66 0.661318
Target:  5'- uCGGUGGUgaGGCcGUccuGAAGcagGCUGCCg -3'
miRNA:   3'- -GCUACCA--CCGaCG---CUUCcaaCGACGG- -5'
22242 3' -55.1 NC_005045.1 + 41826 0.66 0.627513
Target:  5'- uCGAUGGUgccGGCgaaggcGCGGAGGUcuuucugaguUGCagcggcgaagguUGCCa -3'
miRNA:   3'- -GCUACCA---CCGa-----CGCUUCCA----------ACG------------ACGG- -5'
22242 3' -55.1 NC_005045.1 + 5674 0.67 0.593745
Target:  5'- uGAcGGUGGUaagGUGGAGG-UGC-GCCu -3'
miRNA:   3'- gCUaCCACCGa--CGCUUCCaACGaCGG- -5'
22242 3' -55.1 NC_005045.1 + 5100 0.67 0.582544
Target:  5'- --cUGGgcgaUGGCUucGuCGAGGGUUGCaGCCu -3'
miRNA:   3'- gcuACC----ACCGA--C-GCUUCCAACGaCGG- -5'
22242 3' -55.1 NC_005045.1 + 391 0.68 0.52736
Target:  5'- gGGUGGUGG-UGCGGGaGUgGCUaGCCu -3'
miRNA:   3'- gCUACCACCgACGCUUcCAaCGA-CGG- -5'
22242 3' -55.1 NC_005045.1 + 757 0.7 0.404728
Target:  5'- gGGUGGUGGUccugGCu-GGGUgGCUGCUc -3'
miRNA:   3'- gCUACCACCGa---CGcuUCCAaCGACGG- -5'
22242 3' -55.1 NC_005045.1 + 35495 0.74 0.214183
Target:  5'- cCGGUGGcGGCUGCG-GGGUcGUcGCCg -3'
miRNA:   3'- -GCUACCaCCGACGCuUCCAaCGaCGG- -5'
22242 3' -55.1 NC_005045.1 + 6305 1.12 0.000436
Target:  5'- gCGAUGGUGGCUGCGAAGGUUGCUGCCu -3'
miRNA:   3'- -GCUACCACCGACGCUUCCAACGACGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.