miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22242 5' -61.2 NC_005045.1 + 30602 0.66 0.343945
Target:  5'- --cGCCGCCGCCaaCGUgCGCaacCGCa -3'
miRNA:   3'- aauCGGCGGCGGaaGCGgGCGa--GUGc -5'
22242 5' -61.2 NC_005045.1 + 18882 0.66 0.335819
Target:  5'- -gAGCUG-CGCCUgccgUGCCCGCUUg-- -3'
miRNA:   3'- aaUCGGCgGCGGAa---GCGGGCGAGugc -5'
22242 5' -61.2 NC_005045.1 + 2463 0.66 0.333409
Target:  5'- -cAGCCGCCGCaaugCGCUggucgaguggcuggUGCUaCACGg -3'
miRNA:   3'- aaUCGGCGGCGgaa-GCGG--------------GCGA-GUGC- -5'
22242 5' -61.2 NC_005045.1 + 13548 0.66 0.327834
Target:  5'- aUGGCCGaCGCU---GCCCGCUaCAUGa -3'
miRNA:   3'- aAUCGGCgGCGGaagCGGGCGA-GUGC- -5'
22242 5' -61.2 NC_005045.1 + 18259 0.66 0.327834
Target:  5'- -cGGCCccGCCGCCUUCGCUUccugGUggGCGa -3'
miRNA:   3'- aaUCGG--CGGCGGAAGCGGG----CGagUGC- -5'
22242 5' -61.2 NC_005045.1 + 17016 0.67 0.282891
Target:  5'- --uGCCGCCGCCg-CGaCCGUUCAa- -3'
miRNA:   3'- aauCGGCGGCGGaaGCgGGCGAGUgc -5'
22242 5' -61.2 NC_005045.1 + 15471 0.67 0.275893
Target:  5'- --cGCC-CCGCC-UCGCUCGUaCACGu -3'
miRNA:   3'- aauCGGcGGCGGaAGCGGGCGaGUGC- -5'
22242 5' -61.2 NC_005045.1 + 27506 0.67 0.255729
Target:  5'- -aGGCCGCCGCCUggauguacUCaGCCgGCcccggCAUGu -3'
miRNA:   3'- aaUCGGCGGCGGA--------AG-CGGgCGa----GUGC- -5'
22242 5' -61.2 NC_005045.1 + 39265 0.68 0.236789
Target:  5'- -gAGCCaGUCGCCauaacgCGCCUGCUCGu- -3'
miRNA:   3'- aaUCGG-CGGCGGaa----GCGGGCGAGUgc -5'
22242 5' -61.2 NC_005045.1 + 40532 0.68 0.230742
Target:  5'- cUGGCgGCUGCCcUCGCCgGCcuugUCGCc -3'
miRNA:   3'- aAUCGgCGGCGGaAGCGGgCG----AGUGc -5'
22242 5' -61.2 NC_005045.1 + 34011 0.69 0.21338
Target:  5'- gUAGCC-CUGUCccgCGCCCGCUgCACa -3'
miRNA:   3'- aAUCGGcGGCGGaa-GCGGGCGA-GUGc -5'
22242 5' -61.2 NC_005045.1 + 39100 0.7 0.182011
Target:  5'- --cGaCUGCCGUgucagCUUCGCCCGCUCggugGCGg -3'
miRNA:   3'- aauC-GGCGGCG-----GAAGCGGGCGAG----UGC- -5'
22242 5' -61.2 NC_005045.1 + 17819 0.7 0.167908
Target:  5'- aUGGCCGCCGCCgaggUgGCCCugaccgaggagGCUggucCGCGa -3'
miRNA:   3'- aAUCGGCGGCGGa---AgCGGG-----------CGA----GUGC- -5'
22242 5' -61.2 NC_005045.1 + 39694 0.7 0.163429
Target:  5'- --cGUCGCCGCCgUCGCCgGCagggucCACGa -3'
miRNA:   3'- aauCGGCGGCGGaAGCGGgCGa-----GUGC- -5'
22242 5' -61.2 NC_005045.1 + 6541 0.73 0.108096
Target:  5'- --cGCCGCCaCCUugucccaggUCGCCCGCUUGCc -3'
miRNA:   3'- aauCGGCGGcGGA---------AGCGGGCGAGUGc -5'
22242 5' -61.2 NC_005045.1 + 6267 1.06 0.000271
Target:  5'- cUUAGCCGCCGCCUUCGCCCGCUCACGa -3'
miRNA:   3'- -AAUCGGCGGCGGAAGCGGGCGAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.