miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22244 3' -56.9 NC_005045.1 + 32564 0.66 0.580151
Target:  5'- aCGGCCUGacaggcugugcagcUCGCGCcgaaGGCCgUGUcacgucgcgggaugGCCGg -3'
miRNA:   3'- gGUCGGAC--------------AGCGCG----UCGGaACA--------------UGGC- -5'
22244 3' -56.9 NC_005045.1 + 6494 0.66 0.575765
Target:  5'- gCGGCgUGUgcCG-GUAGCCUUGUGCa- -3'
miRNA:   3'- gGUCGgACA--GCgCGUCGGAACAUGgc -5'
22244 3' -56.9 NC_005045.1 + 22212 0.66 0.553957
Target:  5'- gCGGCCUG-CGCGCaucaGGUccugCUUGUACUc -3'
miRNA:   3'- gGUCGGACaGCGCG----UCG----GAACAUGGc -5'
22244 3' -56.9 NC_005045.1 + 10351 0.67 0.511152
Target:  5'- cUCGGCCUugGUCaGCGgGGUCUUGcggGCCa -3'
miRNA:   3'- -GGUCGGA--CAG-CGCgUCGGAACa--UGGc -5'
22244 3' -56.9 NC_005045.1 + 2138 0.67 0.47997
Target:  5'- gCguGCCUuGUCGCgGCgAGCCUUGgcgGCUu -3'
miRNA:   3'- -GguCGGA-CAGCG-CG-UCGGAACa--UGGc -5'
22244 3' -56.9 NC_005045.1 + 39500 0.68 0.439907
Target:  5'- aCAGCagGUCGCGCAGCUUga-GCUGc -3'
miRNA:   3'- gGUCGgaCAGCGCGUCGGAacaUGGC- -5'
22244 3' -56.9 NC_005045.1 + 31489 0.68 0.43019
Target:  5'- cUCAGCCcgGUCGgGC-GUCUgcgUGUACCa -3'
miRNA:   3'- -GGUCGGa-CAGCgCGuCGGA---ACAUGGc -5'
22244 3' -56.9 NC_005045.1 + 7021 0.69 0.401817
Target:  5'- aCCAGCCaGcUCG-GCGGCCc-GUACCa -3'
miRNA:   3'- -GGUCGGaC-AGCgCGUCGGaaCAUGGc -5'
22244 3' -56.9 NC_005045.1 + 40893 0.69 0.401817
Target:  5'- gCAGCCcucaGUgGCGCGGCCUUG-GuuGa -3'
miRNA:   3'- gGUCGGa---CAgCGCGUCGGAACaUggC- -5'
22244 3' -56.9 NC_005045.1 + 23116 0.71 0.308532
Target:  5'- gCGGCCUGggccUGCGCGGCCU---GCUGa -3'
miRNA:   3'- gGUCGGACa---GCGCGUCGGAacaUGGC- -5'
22244 3' -56.9 NC_005045.1 + 19768 0.71 0.27193
Target:  5'- gCUGGUCUGUCGCGaAGCCUg--ACCa -3'
miRNA:   3'- -GGUCGGACAGCGCgUCGGAacaUGGc -5'
22244 3' -56.9 NC_005045.1 + 2819 0.72 0.265042
Target:  5'- uCCAGCgaUGg-GUGCAGCCUUGgcgGCCa -3'
miRNA:   3'- -GGUCGg-ACagCGCGUCGGAACa--UGGc -5'
22244 3' -56.9 NC_005045.1 + 23359 0.73 0.19836
Target:  5'- aCCAGCCgGUgGCGguGCCU---GCCGc -3'
miRNA:   3'- -GGUCGGaCAgCGCguCGGAacaUGGC- -5'
22244 3' -56.9 NC_005045.1 + 13597 0.79 0.083241
Target:  5'- gUCGGCCaugaUGUCGCGCAGCcCUUGUugACCu -3'
miRNA:   3'- -GGUCGG----ACAGCGCGUCG-GAACA--UGGc -5'
22244 3' -56.9 NC_005045.1 + 7948 1.1 0.000433
Target:  5'- gCCAGCCUGUCGCGCAGCCUUGUACCGu -3'
miRNA:   3'- -GGUCGGACAGCGCGUCGGAACAUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.