Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22244 | 3' | -56.9 | NC_005045.1 | + | 32564 | 0.66 | 0.580151 |
Target: 5'- aCGGCCUGacaggcugugcagcUCGCGCcgaaGGCCgUGUcacgucgcgggaugGCCGg -3' miRNA: 3'- gGUCGGAC--------------AGCGCG----UCGGaACA--------------UGGC- -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 6494 | 0.66 | 0.575765 |
Target: 5'- gCGGCgUGUgcCG-GUAGCCUUGUGCa- -3' miRNA: 3'- gGUCGgACA--GCgCGUCGGAACAUGgc -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 22212 | 0.66 | 0.553957 |
Target: 5'- gCGGCCUG-CGCGCaucaGGUccugCUUGUACUc -3' miRNA: 3'- gGUCGGACaGCGCG----UCG----GAACAUGGc -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 10351 | 0.67 | 0.511152 |
Target: 5'- cUCGGCCUugGUCaGCGgGGUCUUGcggGCCa -3' miRNA: 3'- -GGUCGGA--CAG-CGCgUCGGAACa--UGGc -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 2138 | 0.67 | 0.47997 |
Target: 5'- gCguGCCUuGUCGCgGCgAGCCUUGgcgGCUu -3' miRNA: 3'- -GguCGGA-CAGCG-CG-UCGGAACa--UGGc -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 39500 | 0.68 | 0.439907 |
Target: 5'- aCAGCagGUCGCGCAGCUUga-GCUGc -3' miRNA: 3'- gGUCGgaCAGCGCGUCGGAacaUGGC- -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 31489 | 0.68 | 0.43019 |
Target: 5'- cUCAGCCcgGUCGgGC-GUCUgcgUGUACCa -3' miRNA: 3'- -GGUCGGa-CAGCgCGuCGGA---ACAUGGc -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 40893 | 0.69 | 0.401817 |
Target: 5'- gCAGCCcucaGUgGCGCGGCCUUG-GuuGa -3' miRNA: 3'- gGUCGGa---CAgCGCGUCGGAACaUggC- -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 7021 | 0.69 | 0.401817 |
Target: 5'- aCCAGCCaGcUCG-GCGGCCc-GUACCa -3' miRNA: 3'- -GGUCGGaC-AGCgCGUCGGaaCAUGGc -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 23116 | 0.71 | 0.308532 |
Target: 5'- gCGGCCUGggccUGCGCGGCCU---GCUGa -3' miRNA: 3'- gGUCGGACa---GCGCGUCGGAacaUGGC- -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 19768 | 0.71 | 0.27193 |
Target: 5'- gCUGGUCUGUCGCGaAGCCUg--ACCa -3' miRNA: 3'- -GGUCGGACAGCGCgUCGGAacaUGGc -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 2819 | 0.72 | 0.265042 |
Target: 5'- uCCAGCgaUGg-GUGCAGCCUUGgcgGCCa -3' miRNA: 3'- -GGUCGg-ACagCGCGUCGGAACa--UGGc -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 23359 | 0.73 | 0.19836 |
Target: 5'- aCCAGCCgGUgGCGguGCCU---GCCGc -3' miRNA: 3'- -GGUCGGaCAgCGCguCGGAacaUGGC- -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 13597 | 0.79 | 0.083241 |
Target: 5'- gUCGGCCaugaUGUCGCGCAGCcCUUGUugACCu -3' miRNA: 3'- -GGUCGG----ACAGCGCGUCG-GAACA--UGGc -5' |
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22244 | 3' | -56.9 | NC_005045.1 | + | 7948 | 1.1 | 0.000433 |
Target: 5'- gCCAGCCUGUCGCGCAGCCUUGUACCGu -3' miRNA: 3'- -GGUCGGACAGCGCGUCGGAACAUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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