miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22244 5' -54 NC_005045.1 + 6463 0.66 0.709553
Target:  5'- cGACGGCAAgcGGGCgaccUGGGACAaGGUg- -3'
miRNA:   3'- -CUGUCGUU--UCUGaa--GCCCUGU-CCGgg -5'
22244 5' -54 NC_005045.1 + 8899 0.66 0.698426
Target:  5'- cGCAuCAAGGACUUccaCGGGGgGucccuGGCCCa -3'
miRNA:   3'- cUGUcGUUUCUGAA---GCCCUgU-----CCGGG- -5'
22244 5' -54 NC_005045.1 + 22817 0.67 0.653355
Target:  5'- aGCAGCAcaagccGGCUaUCGaGACGGGCCUu -3'
miRNA:   3'- cUGUCGUuu----CUGA-AGCcCUGUCCGGG- -5'
22244 5' -54 NC_005045.1 + 9883 0.67 0.642005
Target:  5'- --aGGCGcGGGCcgccUUCGGGGuCGGGCCa -3'
miRNA:   3'- cugUCGUuUCUG----AAGCCCU-GUCCGGg -5'
22244 5' -54 NC_005045.1 + 33078 0.67 0.619289
Target:  5'- uACAGCGAcgguGGGC--CGGGACuguGGUCCc -3'
miRNA:   3'- cUGUCGUU----UCUGaaGCCCUGu--CCGGG- -5'
22244 5' -54 NC_005045.1 + 21076 0.67 0.619289
Target:  5'- cGGCGccuGCAucGugUUCGaGGACGauccccacgucGGCCCg -3'
miRNA:   3'- -CUGU---CGUuuCugAAGC-CCUGU-----------CCGGG- -5'
22244 5' -54 NC_005045.1 + 34169 0.68 0.59662
Target:  5'- aACGGCAccGugUaUCGGGuGCAGGaCCUg -3'
miRNA:   3'- cUGUCGUuuCugA-AGCCC-UGUCC-GGG- -5'
22244 5' -54 NC_005045.1 + 15089 0.69 0.54067
Target:  5'- gGACAGCcGGGACUUCGacGGcaGCGGGagCCg -3'
miRNA:   3'- -CUGUCGuUUCUGAAGC--CC--UGUCCg-GG- -5'
22244 5' -54 NC_005045.1 + 33945 0.69 0.507939
Target:  5'- uGCAGC--GGGCg-CGGGACAGGgCUa -3'
miRNA:   3'- cUGUCGuuUCUGaaGCCCUGUCCgGG- -5'
22244 5' -54 NC_005045.1 + 18030 0.69 0.506862
Target:  5'- aGCAGCAgaucgcccacgaaGAGGCccuugUCGGGGCGGcgcagaacgacGCCCg -3'
miRNA:   3'- cUGUCGU-------------UUCUGa----AGCCCUGUC-----------CGGG- -5'
22244 5' -54 NC_005045.1 + 42223 0.7 0.455394
Target:  5'- gGGCAGCGAGGGCa--GGGAa--GCCCu -3'
miRNA:   3'- -CUGUCGUUUCUGaagCCCUgucCGGG- -5'
22244 5' -54 NC_005045.1 + 160 0.7 0.455394
Target:  5'- gGGCAGCGAGGGCa--GGGAa--GCCCu -3'
miRNA:   3'- -CUGUCGUUUCUGaagCCCUgucCGGG- -5'
22244 5' -54 NC_005045.1 + 8963 0.7 0.445237
Target:  5'- cGGCGGU--GGugUuUUGGGACugauGGCCCa -3'
miRNA:   3'- -CUGUCGuuUCugA-AGCCCUGu---CCGGG- -5'
22244 5' -54 NC_005045.1 + 18198 0.7 0.435208
Target:  5'- --aAGCGAAGGCggCGGGGCcGGCagCCa -3'
miRNA:   3'- cugUCGUUUCUGaaGCCCUGuCCG--GG- -5'
22244 5' -54 NC_005045.1 + 4489 0.71 0.425311
Target:  5'- gGGCAGC----ACUgCGGGAC-GGCCCg -3'
miRNA:   3'- -CUGUCGuuucUGAaGCCCUGuCCGGG- -5'
22244 5' -54 NC_005045.1 + 22913 0.72 0.377913
Target:  5'- aGCGGCGgagcGGGACagggCGGGA-AGGCCCg -3'
miRNA:   3'- cUGUCGU----UUCUGaa--GCCCUgUCCGGG- -5'
22244 5' -54 NC_005045.1 + 18675 0.73 0.301974
Target:  5'- cGGCGGCAAuGACc-UGGGGC-GGCCCu -3'
miRNA:   3'- -CUGUCGUUuCUGaaGCCCUGuCCGGG- -5'
22244 5' -54 NC_005045.1 + 24822 0.79 0.128923
Target:  5'- aGCAGCAggcugaacacacGAGGCgacaUCGGGGuCAGGCCCu -3'
miRNA:   3'- cUGUCGU------------UUCUGa---AGCCCU-GUCCGGG- -5'
22244 5' -54 NC_005045.1 + 7914 1.13 0.00047
Target:  5'- cGACAGCAAAGACUUCGGGACAGGCCCa -3'
miRNA:   3'- -CUGUCGUUUCUGAAGCCCUGUCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.