Results 1 - 19 of 19 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22244 | 5' | -54 | NC_005045.1 | + | 6463 | 0.66 | 0.709553 |
Target: 5'- cGACGGCAAgcGGGCgaccUGGGACAaGGUg- -3' miRNA: 3'- -CUGUCGUU--UCUGaa--GCCCUGU-CCGgg -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 8899 | 0.66 | 0.698426 |
Target: 5'- cGCAuCAAGGACUUccaCGGGGgGucccuGGCCCa -3' miRNA: 3'- cUGUcGUUUCUGAA---GCCCUgU-----CCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 22817 | 0.67 | 0.653355 |
Target: 5'- aGCAGCAcaagccGGCUaUCGaGACGGGCCUu -3' miRNA: 3'- cUGUCGUuu----CUGA-AGCcCUGUCCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 9883 | 0.67 | 0.642005 |
Target: 5'- --aGGCGcGGGCcgccUUCGGGGuCGGGCCa -3' miRNA: 3'- cugUCGUuUCUG----AAGCCCU-GUCCGGg -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 33078 | 0.67 | 0.619289 |
Target: 5'- uACAGCGAcgguGGGC--CGGGACuguGGUCCc -3' miRNA: 3'- cUGUCGUU----UCUGaaGCCCUGu--CCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 21076 | 0.67 | 0.619289 |
Target: 5'- cGGCGccuGCAucGugUUCGaGGACGauccccacgucGGCCCg -3' miRNA: 3'- -CUGU---CGUuuCugAAGC-CCUGU-----------CCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 34169 | 0.68 | 0.59662 |
Target: 5'- aACGGCAccGugUaUCGGGuGCAGGaCCUg -3' miRNA: 3'- cUGUCGUuuCugA-AGCCC-UGUCC-GGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 15089 | 0.69 | 0.54067 |
Target: 5'- gGACAGCcGGGACUUCGacGGcaGCGGGagCCg -3' miRNA: 3'- -CUGUCGuUUCUGAAGC--CC--UGUCCg-GG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 33945 | 0.69 | 0.507939 |
Target: 5'- uGCAGC--GGGCg-CGGGACAGGgCUa -3' miRNA: 3'- cUGUCGuuUCUGaaGCCCUGUCCgGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 18030 | 0.69 | 0.506862 |
Target: 5'- aGCAGCAgaucgcccacgaaGAGGCccuugUCGGGGCGGcgcagaacgacGCCCg -3' miRNA: 3'- cUGUCGU-------------UUCUGa----AGCCCUGUC-----------CGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 42223 | 0.7 | 0.455394 |
Target: 5'- gGGCAGCGAGGGCa--GGGAa--GCCCu -3' miRNA: 3'- -CUGUCGUUUCUGaagCCCUgucCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 160 | 0.7 | 0.455394 |
Target: 5'- gGGCAGCGAGGGCa--GGGAa--GCCCu -3' miRNA: 3'- -CUGUCGUUUCUGaagCCCUgucCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 8963 | 0.7 | 0.445237 |
Target: 5'- cGGCGGU--GGugUuUUGGGACugauGGCCCa -3' miRNA: 3'- -CUGUCGuuUCugA-AGCCCUGu---CCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 18198 | 0.7 | 0.435208 |
Target: 5'- --aAGCGAAGGCggCGGGGCcGGCagCCa -3' miRNA: 3'- cugUCGUUUCUGaaGCCCUGuCCG--GG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 4489 | 0.71 | 0.425311 |
Target: 5'- gGGCAGC----ACUgCGGGAC-GGCCCg -3' miRNA: 3'- -CUGUCGuuucUGAaGCCCUGuCCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 22913 | 0.72 | 0.377913 |
Target: 5'- aGCGGCGgagcGGGACagggCGGGA-AGGCCCg -3' miRNA: 3'- cUGUCGU----UUCUGaa--GCCCUgUCCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 18675 | 0.73 | 0.301974 |
Target: 5'- cGGCGGCAAuGACc-UGGGGC-GGCCCu -3' miRNA: 3'- -CUGUCGUUuCUGaaGCCCUGuCCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 24822 | 0.79 | 0.128923 |
Target: 5'- aGCAGCAggcugaacacacGAGGCgacaUCGGGGuCAGGCCCu -3' miRNA: 3'- cUGUCGU------------UUCUGa---AGCCCU-GUCCGGG- -5' |
|||||||
22244 | 5' | -54 | NC_005045.1 | + | 7914 | 1.13 | 0.00047 |
Target: 5'- cGACAGCAAAGACUUCGGGACAGGCCCa -3' miRNA: 3'- -CUGUCGUUUCUGAAGCCCUGUCCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home