miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22245 5' -58 NC_005045.1 + 29963 0.66 0.478065
Target:  5'- uGAGGCCCUggagcaGUGggacaagAUGCaGGCGGCc -3'
miRNA:   3'- -CUCCGGGAag----UACa------UGCGgCCGUCGu -5'
22245 5' -58 NC_005045.1 + 21820 0.66 0.437756
Target:  5'- cGAGGUUgUUCAcuagcaggGCGCCGGCAGa- -3'
miRNA:   3'- -CUCCGGgAAGUaca-----UGCGGCCGUCgu -5'
22245 5' -58 NC_005045.1 + 34263 0.66 0.437756
Target:  5'- -uGGCCCgcgCAgGUAUGCCGGgGGa- -3'
miRNA:   3'- cuCCGGGaa-GUaCAUGCGGCCgUCgu -5'
22245 5' -58 NC_005045.1 + 26356 0.66 0.436773
Target:  5'- -cGGCCaCUUaCGUG-ACGCCGGacaacgcCAGCAc -3'
miRNA:   3'- cuCCGG-GAA-GUACaUGCGGCC-------GUCGU- -5'
22245 5' -58 NC_005045.1 + 26821 0.66 0.427986
Target:  5'- cGGGGCCUUg-GUGga-GCCGGUGGCc -3'
miRNA:   3'- -CUCCGGGAagUACaugCGGCCGUCGu -5'
22245 5' -58 NC_005045.1 + 36871 0.67 0.418346
Target:  5'- gGAGGCUggaCgaaCAUGUuCGCCGGCAccgGCAa -3'
miRNA:   3'- -CUCCGG---Gaa-GUACAuGCGGCCGU---CGU- -5'
22245 5' -58 NC_005045.1 + 21061 0.67 0.381143
Target:  5'- -uGGCCa-----GUugGCCGGCGGCGc -3'
miRNA:   3'- cuCCGGgaaguaCAugCGGCCGUCGU- -5'
22245 5' -58 NC_005045.1 + 20980 0.68 0.35387
Target:  5'- cAGGCCCaUCAguucggaUGggGCGCCGGCcuuuGCGu -3'
miRNA:   3'- cUCCGGGaAGU-------ACa-UGCGGCCGu---CGU- -5'
22245 5' -58 NC_005045.1 + 23272 0.68 0.329631
Target:  5'- --aGCCCggUCAgguggGUGCGCCG-CAGCAa -3'
miRNA:   3'- cucCGGGa-AGUa----CAUGCGGCcGUCGU- -5'
22245 5' -58 NC_005045.1 + 6903 0.69 0.31364
Target:  5'- aAGGCCCUgugCGUugACGaCCGGCAcaGCAg -3'
miRNA:   3'- cUCCGGGAa--GUAcaUGC-GGCCGU--CGU- -5'
22245 5' -58 NC_005045.1 + 13624 0.69 0.290769
Target:  5'- cAGGCgCUcgcUCAUGUA-GCgGGCAGCGu -3'
miRNA:   3'- cUCCGgGA---AGUACAUgCGgCCGUCGU- -5'
22245 5' -58 NC_005045.1 + 34851 0.7 0.242524
Target:  5'- -cGGCCCUUCGaGUGCuCCaGCAGUAc -3'
miRNA:   3'- cuCCGGGAAGUaCAUGcGGcCGUCGU- -5'
22245 5' -58 NC_005045.1 + 11789 0.71 0.229409
Target:  5'- cAGGCCCguggCAUGUGgGCUGGCuaccuggAGCGc -3'
miRNA:   3'- cUCCGGGaa--GUACAUgCGGCCG-------UCGU- -5'
22245 5' -58 NC_005045.1 + 23875 0.73 0.166019
Target:  5'- aGGGUCCg-CGUGUugguugaagACGCCGGCAGCc -3'
miRNA:   3'- cUCCGGGaaGUACA---------UGCGGCCGUCGu -5'
22245 5' -58 NC_005045.1 + 39338 0.75 0.118464
Target:  5'- cGAGGCCCUUgCcgGUGCGCgGGUuguGGCc -3'
miRNA:   3'- -CUCCGGGAA-GuaCAUGCGgCCG---UCGu -5'
22245 5' -58 NC_005045.1 + 8664 1.07 0.000405
Target:  5'- gGAGGCCCUUCAUGUACGCCGGCAGCAc -3'
miRNA:   3'- -CUCCGGGAAGUACAUGCGGCCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.