Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22247 | 3' | -55.9 | NC_005045.1 | + | 30096 | 0.66 | 0.620555 |
Target: 5'- -gCGguucGCAUGa--UCCAGGCGGCCa- -3' miRNA: 3'- gaGCa---CGUACaugAGGUCCGCUGGgu -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 17794 | 0.66 | 0.612712 |
Target: 5'- cCUCGUGCAUGagGCguucaaugcaauggCCgccgccgAGGUGGCCCu -3' miRNA: 3'- -GAGCACGUACa-UGa-------------GG-------UCCGCUGGGu -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 30023 | 0.66 | 0.610472 |
Target: 5'- cCUCGUGCAggGUACgcagcucggccugcgCCuGGgGACCUu -3' miRNA: 3'- -GAGCACGUa-CAUGa--------------GGuCCgCUGGGu -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 33285 | 0.66 | 0.575907 |
Target: 5'- aUCGUGCA-GUccACUCgGGaGCGcGCCCGu -3' miRNA: 3'- gAGCACGUaCA--UGAGgUC-CGC-UGGGU- -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 26542 | 0.67 | 0.53202 |
Target: 5'- uUCGUcgaguuggGCAgagUGUACUCC-GGCGcCCCGa -3' miRNA: 3'- gAGCA--------CGU---ACAUGAGGuCCGCuGGGU- -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 2678 | 0.67 | 0.521229 |
Target: 5'- ----aGCAgGUGCUCCAGGCGcagaCCAa -3' miRNA: 3'- gagcaCGUaCAUGAGGUCCGCug--GGU- -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 39740 | 0.67 | 0.521229 |
Target: 5'- -aCGUGgAUGUACgggCCAaGCGugCCGc -3' miRNA: 3'- gaGCACgUACAUGa--GGUcCGCugGGU- -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 5543 | 0.67 | 0.499911 |
Target: 5'- ----aGCGUaccGUGCUcCCAGGUGACCCc -3' miRNA: 3'- gagcaCGUA---CAUGA-GGUCCGCUGGGu -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 30889 | 0.68 | 0.489397 |
Target: 5'- gCUgGUGCGgucGUACUCgaAGGCGACUa- -3' miRNA: 3'- -GAgCACGUa--CAUGAGg-UCCGCUGGgu -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 27084 | 0.68 | 0.472794 |
Target: 5'- ---aUGCAgacGUACUCCugcgacaggaggacgAGGCGACCCu -3' miRNA: 3'- gagcACGUa--CAUGAGG---------------UCCGCUGGGu -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 9903 | 0.69 | 0.418998 |
Target: 5'- cCUUGUGCAgGUACgcacCCAGGCGcggGCCg- -3' miRNA: 3'- -GAGCACGUaCAUGa---GGUCCGC---UGGgu -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 35025 | 0.69 | 0.400035 |
Target: 5'- gUC-UGCuUG-GCUCCAGGCGcCCCAa -3' miRNA: 3'- gAGcACGuACaUGAGGUCCGCuGGGU- -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 32607 | 0.69 | 0.400035 |
Target: 5'- cCUCG-GCGUGgguCUUgAGGUGAUCCAc -3' miRNA: 3'- -GAGCaCGUACau-GAGgUCCGCUGGGU- -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 17155 | 0.7 | 0.381629 |
Target: 5'- gUUGUGCGucaUGUACUCCAGcuuGCGGCUg- -3' miRNA: 3'- gAGCACGU---ACAUGAGGUC---CGCUGGgu -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 30487 | 0.73 | 0.22385 |
Target: 5'- -cCGUucugaGCAUGUACcgCCGGGCGACCa- -3' miRNA: 3'- gaGCA-----CGUACAUGa-GGUCCGCUGGgu -5' |
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22247 | 3' | -55.9 | NC_005045.1 | + | 11151 | 1.09 | 0.000606 |
Target: 5'- cCUCGUGCAUGUACUCCAGGCGACCCAg -3' miRNA: 3'- -GAGCACGUACAUGAGGUCCGCUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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