miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22247 3' -55.9 NC_005045.1 + 30096 0.66 0.620555
Target:  5'- -gCGguucGCAUGa--UCCAGGCGGCCa- -3'
miRNA:   3'- gaGCa---CGUACaugAGGUCCGCUGGgu -5'
22247 3' -55.9 NC_005045.1 + 17794 0.66 0.612712
Target:  5'- cCUCGUGCAUGagGCguucaaugcaauggCCgccgccgAGGUGGCCCu -3'
miRNA:   3'- -GAGCACGUACa-UGa-------------GG-------UCCGCUGGGu -5'
22247 3' -55.9 NC_005045.1 + 30023 0.66 0.610472
Target:  5'- cCUCGUGCAggGUACgcagcucggccugcgCCuGGgGACCUu -3'
miRNA:   3'- -GAGCACGUa-CAUGa--------------GGuCCgCUGGGu -5'
22247 3' -55.9 NC_005045.1 + 33285 0.66 0.575907
Target:  5'- aUCGUGCA-GUccACUCgGGaGCGcGCCCGu -3'
miRNA:   3'- gAGCACGUaCA--UGAGgUC-CGC-UGGGU- -5'
22247 3' -55.9 NC_005045.1 + 26542 0.67 0.53202
Target:  5'- uUCGUcgaguuggGCAgagUGUACUCC-GGCGcCCCGa -3'
miRNA:   3'- gAGCA--------CGU---ACAUGAGGuCCGCuGGGU- -5'
22247 3' -55.9 NC_005045.1 + 2678 0.67 0.521229
Target:  5'- ----aGCAgGUGCUCCAGGCGcagaCCAa -3'
miRNA:   3'- gagcaCGUaCAUGAGGUCCGCug--GGU- -5'
22247 3' -55.9 NC_005045.1 + 39740 0.67 0.521229
Target:  5'- -aCGUGgAUGUACgggCCAaGCGugCCGc -3'
miRNA:   3'- gaGCACgUACAUGa--GGUcCGCugGGU- -5'
22247 3' -55.9 NC_005045.1 + 5543 0.67 0.499911
Target:  5'- ----aGCGUaccGUGCUcCCAGGUGACCCc -3'
miRNA:   3'- gagcaCGUA---CAUGA-GGUCCGCUGGGu -5'
22247 3' -55.9 NC_005045.1 + 30889 0.68 0.489397
Target:  5'- gCUgGUGCGgucGUACUCgaAGGCGACUa- -3'
miRNA:   3'- -GAgCACGUa--CAUGAGg-UCCGCUGGgu -5'
22247 3' -55.9 NC_005045.1 + 27084 0.68 0.472794
Target:  5'- ---aUGCAgacGUACUCCugcgacaggaggacgAGGCGACCCu -3'
miRNA:   3'- gagcACGUa--CAUGAGG---------------UCCGCUGGGu -5'
22247 3' -55.9 NC_005045.1 + 9903 0.69 0.418998
Target:  5'- cCUUGUGCAgGUACgcacCCAGGCGcggGCCg- -3'
miRNA:   3'- -GAGCACGUaCAUGa---GGUCCGC---UGGgu -5'
22247 3' -55.9 NC_005045.1 + 35025 0.69 0.400035
Target:  5'- gUC-UGCuUG-GCUCCAGGCGcCCCAa -3'
miRNA:   3'- gAGcACGuACaUGAGGUCCGCuGGGU- -5'
22247 3' -55.9 NC_005045.1 + 32607 0.69 0.400035
Target:  5'- cCUCG-GCGUGgguCUUgAGGUGAUCCAc -3'
miRNA:   3'- -GAGCaCGUACau-GAGgUCCGCUGGGU- -5'
22247 3' -55.9 NC_005045.1 + 17155 0.7 0.381629
Target:  5'- gUUGUGCGucaUGUACUCCAGcuuGCGGCUg- -3'
miRNA:   3'- gAGCACGU---ACAUGAGGUC---CGCUGGgu -5'
22247 3' -55.9 NC_005045.1 + 30487 0.73 0.22385
Target:  5'- -cCGUucugaGCAUGUACcgCCGGGCGACCa- -3'
miRNA:   3'- gaGCA-----CGUACAUGa-GGUCCGCUGGgu -5'
22247 3' -55.9 NC_005045.1 + 11151 1.09 0.000606
Target:  5'- cCUCGUGCAUGUACUCCAGGCGACCCAg -3'
miRNA:   3'- -GAGCACGUACAUGAGGUCCGCUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.