miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22247 5' -56 NC_005045.1 + 32598 0.66 0.597761
Target:  5'- gGUGGCUgaCACCCucaagacccuGGAGgGCCuGGGGCa -3'
miRNA:   3'- gCAUUGA--GUGGG----------CCUCaUGG-UCCCGc -5'
22247 5' -56 NC_005045.1 + 16862 0.66 0.586744
Target:  5'- gGUGAUcUACauGGAcUGCCAGGGCGc -3'
miRNA:   3'- gCAUUGaGUGggCCUcAUGGUCCCGC- -5'
22247 5' -56 NC_005045.1 + 35431 0.68 0.521734
Target:  5'- aGU-GCUCcgccaGCCCGaAG-ACCGGGGCGg -3'
miRNA:   3'- gCAuUGAG-----UGGGCcUCaUGGUCCCGC- -5'
22247 5' -56 NC_005045.1 + 23496 0.68 0.469782
Target:  5'- --gAACUgCACCCgcagccggcGGAGcUACCGGGGCc -3'
miRNA:   3'- gcaUUGA-GUGGG---------CCUC-AUGGUCCCGc -5'
22247 5' -56 NC_005045.1 + 5155 0.68 0.46877
Target:  5'- -cUAGCUCgcaauagGCCCGGAGgGCC-GGGCc -3'
miRNA:   3'- gcAUUGAG-------UGGGCCUCaUGGuCCCGc -5'
22247 5' -56 NC_005045.1 + 11678 0.69 0.459706
Target:  5'- gGUGuGCUCACCuCGGAGauggACCAGGaccugcugaGCGa -3'
miRNA:   3'- gCAU-UGAGUGG-GCCUCa---UGGUCC---------CGC- -5'
22247 5' -56 NC_005045.1 + 30214 0.7 0.401817
Target:  5'- aCGUGAUgcuaUCAgguauCCCGGAGgccgAgCAGGGCGc -3'
miRNA:   3'- -GCAUUG----AGU-----GGGCCUCa---UgGUCCCGC- -5'
22247 5' -56 NC_005045.1 + 24302 0.7 0.392627
Target:  5'- gCGUGGCUCgaacgugguccGCCUGGAucGCCuGGGCa -3'
miRNA:   3'- -GCAUUGAG-----------UGGGCCUcaUGGuCCCGc -5'
22247 5' -56 NC_005045.1 + 458 0.7 0.392627
Target:  5'- uGUGGCUCuACCUGG-GUACUcccuGGGUGg -3'
miRNA:   3'- gCAUUGAG-UGGGCCuCAUGGu---CCCGC- -5'
22247 5' -56 NC_005045.1 + 4752 0.7 0.383574
Target:  5'- --cAGCUuggCGCCCGGGGUAgCAGcGGUGg -3'
miRNA:   3'- gcaUUGA---GUGGGCCUCAUgGUC-CCGC- -5'
22247 5' -56 NC_005045.1 + 11113 1.08 0.000815
Target:  5'- uCGUAACUCACCCGGAGUACCAGGGCGc -3'
miRNA:   3'- -GCAUUGAGUGGGCCUCAUGGUCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.