Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22247 | 5' | -56 | NC_005045.1 | + | 32598 | 0.66 | 0.597761 |
Target: 5'- gGUGGCUgaCACCCucaagacccuGGAGgGCCuGGGGCa -3' miRNA: 3'- gCAUUGA--GUGGG----------CCUCaUGG-UCCCGc -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 16862 | 0.66 | 0.586744 |
Target: 5'- gGUGAUcUACauGGAcUGCCAGGGCGc -3' miRNA: 3'- gCAUUGaGUGggCCUcAUGGUCCCGC- -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 35431 | 0.68 | 0.521734 |
Target: 5'- aGU-GCUCcgccaGCCCGaAG-ACCGGGGCGg -3' miRNA: 3'- gCAuUGAG-----UGGGCcUCaUGGUCCCGC- -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 23496 | 0.68 | 0.469782 |
Target: 5'- --gAACUgCACCCgcagccggcGGAGcUACCGGGGCc -3' miRNA: 3'- gcaUUGA-GUGGG---------CCUC-AUGGUCCCGc -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 5155 | 0.68 | 0.46877 |
Target: 5'- -cUAGCUCgcaauagGCCCGGAGgGCC-GGGCc -3' miRNA: 3'- gcAUUGAG-------UGGGCCUCaUGGuCCCGc -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 11678 | 0.69 | 0.459706 |
Target: 5'- gGUGuGCUCACCuCGGAGauggACCAGGaccugcugaGCGa -3' miRNA: 3'- gCAU-UGAGUGG-GCCUCa---UGGUCC---------CGC- -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 30214 | 0.7 | 0.401817 |
Target: 5'- aCGUGAUgcuaUCAgguauCCCGGAGgccgAgCAGGGCGc -3' miRNA: 3'- -GCAUUG----AGU-----GGGCCUCa---UgGUCCCGC- -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 458 | 0.7 | 0.392627 |
Target: 5'- uGUGGCUCuACCUGG-GUACUcccuGGGUGg -3' miRNA: 3'- gCAUUGAG-UGGGCCuCAUGGu---CCCGC- -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 24302 | 0.7 | 0.392627 |
Target: 5'- gCGUGGCUCgaacgugguccGCCUGGAucGCCuGGGCa -3' miRNA: 3'- -GCAUUGAG-----------UGGGCCUcaUGGuCCCGc -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 4752 | 0.7 | 0.383574 |
Target: 5'- --cAGCUuggCGCCCGGGGUAgCAGcGGUGg -3' miRNA: 3'- gcaUUGA---GUGGGCCUCAUgGUC-CCGC- -5' |
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22247 | 5' | -56 | NC_005045.1 | + | 11113 | 1.08 | 0.000815 |
Target: 5'- uCGUAACUCACCCGGAGUACCAGGGCGc -3' miRNA: 3'- -GCAUUGAGUGGGCCUCAUGGUCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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