miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22248 3' -50 NC_005045.1 + 1156 0.67 0.841358
Target:  5'- gGUACAGUucgCACcaCUGAUGgccACUCAGCAa -3'
miRNA:   3'- -CAUGUCG---GUGcaGACUAC---UGAGUUGU- -5'
22248 3' -50 NC_005045.1 + 5077 0.66 0.907138
Target:  5'- uUGCAGCCugGgCUGccgacGACUgGACGg -3'
miRNA:   3'- cAUGUCGGugCaGACua---CUGAgUUGU- -5'
22248 3' -50 NC_005045.1 + 11542 0.68 0.781343
Target:  5'- ---uGGCCGgGUCUGGUGuACcCAGCAg -3'
miRNA:   3'- caugUCGGUgCAGACUAC-UGaGUUGU- -5'
22248 3' -50 NC_005045.1 + 11644 1.09 0.002188
Target:  5'- gGUACAGCCACGUCUGAUGACUCAACAg -3'
miRNA:   3'- -CAUGUCGGUGCAGACUACUGAGUUGU- -5'
22248 3' -50 NC_005045.1 + 17341 0.76 0.382373
Target:  5'- -cACGGCCACGUUagGAUGGC-CGACGa -3'
miRNA:   3'- caUGUCGGUGCAGa-CUACUGaGUUGU- -5'
22248 3' -50 NC_005045.1 + 18265 0.66 0.884634
Target:  5'- -cGCAGUCAUGgcgCUGcgGGCUgGGCu -3'
miRNA:   3'- caUGUCGGUGCa--GACuaCUGAgUUGu -5'
22248 3' -50 NC_005045.1 + 22360 0.69 0.726381
Target:  5'- -cGCGGCCACGUC-GAgGACuacaUCGGCGa -3'
miRNA:   3'- caUGUCGGUGCAGaCUaCUG----AGUUGU- -5'
22248 3' -50 NC_005045.1 + 26034 0.67 0.868151
Target:  5'- -cGCAGCauuGCGaugCUGGUGGCgCAGCAc -3'
miRNA:   3'- caUGUCGg--UGCa--GACUACUGaGUUGU- -5'
22248 3' -50 NC_005045.1 + 26094 0.67 0.841358
Target:  5'- -gACGGUCGCcugCUGAUGGgUCAGCc -3'
miRNA:   3'- caUGUCGGUGca-GACUACUgAGUUGu -5'
22248 3' -50 NC_005045.1 + 33928 0.73 0.517926
Target:  5'- -cACuGCCuCG-CUGAUGGCUCGGCGg -3'
miRNA:   3'- caUGuCGGuGCaGACUACUGAGUUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.