miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22248 5' -59.8 NC_005045.1 + 29463 0.66 0.428529
Target:  5'- aCUGUuacccUGGGUACggaaGCCAcgggcGGCCUGGUCGa -3'
miRNA:   3'- gGACG-----ACCCAUG----UGGU-----CUGGGCCGGU- -5'
22248 5' -59.8 NC_005045.1 + 25412 0.66 0.409863
Target:  5'- aCCUGgUGGaGgcacaagcugACACCuGACCCcacgGGCCGc -3'
miRNA:   3'- -GGACgACC-Ca---------UGUGGuCUGGG----CCGGU- -5'
22248 5' -59.8 NC_005045.1 + 31388 0.66 0.404363
Target:  5'- aCUGCcGGGcACGCCcuucgcccaucuggaAGGCCauacCGGCCAa -3'
miRNA:   3'- gGACGaCCCaUGUGG---------------UCUGG----GCCGGU- -5'
22248 5' -59.8 NC_005045.1 + 27436 0.66 0.391712
Target:  5'- gCCgGCUGaGUACAuCCAGGCggCGGCCu -3'
miRNA:   3'- -GGaCGACcCAUGU-GGUCUGg-GCCGGu -5'
22248 5' -59.8 NC_005045.1 + 23343 0.66 0.391712
Target:  5'- gUUGCUGcGGcGCACCcaccuGACCgGGCUg -3'
miRNA:   3'- gGACGAC-CCaUGUGGu----CUGGgCCGGu -5'
22248 5' -59.8 NC_005045.1 + 36958 0.66 0.391712
Target:  5'- aCCg---GGGUACgguuGCCGGugCCGGCgAa -3'
miRNA:   3'- -GGacgaCCCAUG----UGGUCugGGCCGgU- -5'
22248 5' -59.8 NC_005045.1 + 38706 0.67 0.374092
Target:  5'- gCCUGUaucuauguggUGuGGUGCAUcacgCAGaACCCGGCUAc -3'
miRNA:   3'- -GGACG----------AC-CCAUGUG----GUC-UGGGCCGGU- -5'
22248 5' -59.8 NC_005045.1 + 30025 0.67 0.365485
Target:  5'- uCgUGCaGGGUACGCa--GCUCGGCCu -3'
miRNA:   3'- -GgACGaCCCAUGUGgucUGGGCCGGu -5'
22248 5' -59.8 NC_005045.1 + 23301 0.67 0.365485
Target:  5'- gCUGCUGGau-CACCGGGuuCGGCa- -3'
miRNA:   3'- gGACGACCcauGUGGUCUggGCCGgu -5'
22248 5' -59.8 NC_005045.1 + 41994 0.67 0.348687
Target:  5'- --gGCUGGGUugGCUGGugUgGGCgGg -3'
miRNA:   3'- ggaCGACCCAugUGGUCugGgCCGgU- -5'
22248 5' -59.8 NC_005045.1 + 38842 0.68 0.327684
Target:  5'- aCCUGCgccccgaggcccgcaUGGGUG-ACCGuACCuCGGCCAc -3'
miRNA:   3'- -GGACG---------------ACCCAUgUGGUcUGG-GCCGGU- -5'
22248 5' -59.8 NC_005045.1 + 17366 0.68 0.301654
Target:  5'- --gGCUGGGUGCAUacgCAGACC-GGCa- -3'
miRNA:   3'- ggaCGACCCAUGUG---GUCUGGgCCGgu -5'
22248 5' -59.8 NC_005045.1 + 37327 0.69 0.273108
Target:  5'- gUCUGUcgUGGcgcgcuaucaGUGCGCCGGACaauaaCGGCCAg -3'
miRNA:   3'- -GGACG--ACC----------CAUGUGGUCUGg----GCCGGU- -5'
22248 5' -59.8 NC_005045.1 + 2727 0.69 0.259667
Target:  5'- aCUGCUGGGUG-ACCuGGAagcgCUGGCCGc -3'
miRNA:   3'- gGACGACCCAUgUGG-UCUg---GGCCGGU- -5'
22248 5' -59.8 NC_005045.1 + 32046 0.69 0.24677
Target:  5'- --gGCU-GGUAUGCUGGACCCGGCa- -3'
miRNA:   3'- ggaCGAcCCAUGUGGUCUGGGCCGgu -5'
22248 5' -59.8 NC_005045.1 + 36245 0.7 0.222571
Target:  5'- uUCUGCaagcgguugaUGGucACGCCAGGgCCGGCCAc -3'
miRNA:   3'- -GGACG----------ACCcaUGUGGUCUgGGCCGGU- -5'
22248 5' -59.8 NC_005045.1 + 33204 0.71 0.200421
Target:  5'- gCCaUGCcGGGuUACACCaAGGCUCaGGCCAa -3'
miRNA:   3'- -GG-ACGaCCC-AUGUGG-UCUGGG-CCGGU- -5'
22248 5' -59.8 NC_005045.1 + 27891 0.71 0.195192
Target:  5'- aCCgagaUGGGUACGCUccauguAGGCgCCGGCCAc -3'
miRNA:   3'- -GGacg-ACCCAUGUGG------UCUG-GGCCGGU- -5'
22248 5' -59.8 NC_005045.1 + 14767 0.71 0.182151
Target:  5'- uCCUGCUGGGUgGCGgCgaGGACCUgaucaucaagccgaaGGCCAa -3'
miRNA:   3'- -GGACGACCCA-UGUgG--UCUGGG---------------CCGGU- -5'
22248 5' -59.8 NC_005045.1 + 25972 0.72 0.153291
Target:  5'- aCCUGCUGcaUACcgACCAGcCCUGGCCGa -3'
miRNA:   3'- -GGACGACccAUG--UGGUCuGGGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.